Links from Gene
Items: 1 to 20 of 1000
1.
rs1491502103 has merged into rs34711370 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATA>-,TA,TATATA,TATATATA,TATATATATA
[Show Flanks]
- Chromosome:
- 9:99865315
(GRCh38)
9:102627597
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATATATA
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATATATATATA=0./0
(
ALFA)
AT=0.264/1322
(1000Genomes)
AT=0.3611/13
(GENOME_DK)
AT=0.3683/221
(NorthernSweden)
- HGVS:
NC_000009.12:g.99865303TA[6], NC_000009.12:g.99865303TA[7], NC_000009.12:g.99865303TA[9], NC_000009.12:g.99865303TA[10], NC_000009.12:g.99865303TA[11], NC_000009.11:g.102627585TA[6], NC_000009.11:g.102627585TA[7], NC_000009.11:g.102627585TA[9], NC_000009.11:g.102627585TA[10], NC_000009.11:g.102627585TA[11], NG_028910.1:g.48449TA[6], NG_028910.1:g.48449TA[7], NG_028910.1:g.48449TA[9], NG_028910.1:g.48449TA[10], NG_028910.1:g.48449TA[11], NM_006981.4:c.*1436TA[6], NM_006981.4:c.*1436TA[7], NM_006981.4:c.*1436TA[9], NM_006981.4:c.*1436TA[10], NM_006981.4:c.*1436TA[11], NM_006981.3:c.*1436TA[6], NM_006981.3:c.*1436TA[7], NM_006981.3:c.*1436TA[9], NM_006981.3:c.*1436TA[10], NM_006981.3:c.*1436TA[11], NM_173200.3:c.*1436TA[6], NM_173200.3:c.*1436TA[7], NM_173200.3:c.*1436TA[9], NM_173200.3:c.*1436TA[10], NM_173200.3:c.*1436TA[11], NM_173200.2:c.*1436TA[6], NM_173200.2:c.*1436TA[7], NM_173200.2:c.*1436TA[9], NM_173200.2:c.*1436TA[10], NM_173200.2:c.*1436TA[11], XM_017015162.2:c.*1436TA[6], XM_017015162.2:c.*1436TA[7], XM_017015162.2:c.*1436TA[9], XM_017015162.2:c.*1436TA[10], XM_017015162.2:c.*1436TA[11], XM_017015162.1:c.*1436TA[6], XM_017015162.1:c.*1436TA[7], XM_017015162.1:c.*1436TA[9], XM_017015162.1:c.*1436TA[10], XM_017015162.1:c.*1436TA[11], NM_173198.1:c.*1436TA[6], NM_173198.1:c.*1436TA[7], NM_173198.1:c.*1436TA[9], NM_173198.1:c.*1436TA[10], NM_173198.1:c.*1436TA[11]
2.
rs1491395892 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AT>-
[Show Flanks]
- Chromosome:
- 9:99843681
(GRCh38)
9:102605963
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99843680:AT:
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.000098/11
(GnomAD)
- HGVS:
3.
rs1491302862 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 9:99860214
(GRCh38)
9:102622496
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99860213:GT:
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0.000285/4
(
ALFA)
-=0.000465/123
(TOPMED)
-=0.000599/3
(1000Genomes)
-=0.000805/86
(GnomAD)
- HGVS:
4.
rs1491025645 has merged into rs748013375 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GG>-
[Show Flanks]
- Chromosome:
- 9:99841734
(GRCh38)
9:102604016
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99841732:GGG:G
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency
- MAF:
-=0.000015/2
(GnomAD)
- HGVS:
5.
rs1490995701 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 9:99831502
(GRCh38)
9:102593784
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99831501:T:G
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
6.
rs1490923254 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:99850747
(GRCh38)
9:102613029
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99850746:T:C
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
7.
rs1490900895 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:99851368
(GRCh38)
9:102613650
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99851367:G:A
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
8.
rs1490834375 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:99860366
(GRCh38)
9:102622648
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99860365:T:C
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS:
9.
rs1490739835 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:99839865
(GRCh38)
9:102602147
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99839864:C:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
- HGVS:
10.
rs1490645538 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:99822067
(GRCh38)
9:102584349
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99822066:C:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
- HGVS:
NC_000009.12:g.99822067C>T, NC_000009.11:g.102584349C>T, NG_028910.1:g.5213C>T, NM_006981.4:c.-517C>T, NM_006981.3:c.-517C>T, NM_173199.4:c.-517C>T, NM_173199.3:c.-517C>T, NM_173199.2:c.-517C>T, NM_173200.3:c.-556C>T, NM_173200.2:c.-556C>T, NM_173198.1:c.-1264C>T
11.
rs1490615636 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 9:99829819
(GRCh38)
9:102592101
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99829818:G:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000021/3
(GnomAD)
- HGVS:
12.
rs1490612250 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 9:99839993
(GRCh38)
9:102602276
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99839993:AAAAAA:AAAAAAA
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAA=0.000071/1
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000008/2
(TOPMED)
- HGVS:
13.
rs1490483804 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:99849139
(GRCh38)
9:102611421
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99849138:G:A
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000011/3
(TOPMED)
- HGVS:
14.
rs1490416373 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 9:99827119
(GRCh38)
9:102589401
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99827118:A:G
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000007/1
(GnomAD)
- HGVS:
15.
rs1490269835 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:99823907
(GRCh38)
9:102586189
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99823906:C:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
16.
rs1490046888 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 9:99849566
(GRCh38)
9:102611848
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99849565:C:G,NC_000009.12:99849565:C:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.00011/2
(
ALFA)
T=0.00045/2
(Estonian)
- HGVS:
17.
rs1489964576 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 9:99862102
(GRCh38)
9:102624384
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99862101:A:C
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000008/2
(TOPMED)
- HGVS:
18.
rs1489937716 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 9:99857012
(GRCh38)
9:102619294
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99857011:T:G
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency
- MAF:
G=0.000007/1
(GnomAD)
- HGVS:
19.
rs1489905845 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:99841745
(GRCh38)
9:102604027
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99841744:C:T
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000026/7
(TOPMED)
T=0.000035/4
(GnomAD)
- HGVS:
20.
rs1489903020 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:99853570
(GRCh38)
9:102615852
(GRCh37)
- Canonical SPDI:
- NC_000009.12:99853569:T:C
- Gene:
- NR4A3 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0.00017/2
(
ALFA)
C=0.00006/3
(GnomAD)
- HGVS: