SNP Links for Gene (Select 8013) - SNP

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Select item 14915021031.

rs1491502103 has merged into rs34711370 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>-,TA,TATATA,TATATATA,TATATATATA [Show Flanks]
Chromosome:: 9:99865315 (GRCh38)
9:102627597 (GRCh37)
Canonical SPDI:: NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATATA,NC_000009.12:99865301:ATATATATATATATATA:ATATATATATATATATATATATA
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATATATA=0./0 (ALFA)
AT=0.264/1322 (1000Genomes)
AT=0.3611/13 (GENOME_DK)
AT=0.3683/221 (NorthernSweden)
HGVS:: NC_000009.12:g.99865303TA[6], NC_000009.12:g.99865303TA[7], NC_000009.12:g.99865303TA[9], NC_000009.12:g.99865303TA[10], NC_000009.12:g.99865303TA[11], NC_000009.11:g.102627585TA[6], NC_000009.11:g.102627585TA[7], NC_000009.11:g.102627585TA[9], NC_000009.11:g.102627585TA[10], NC_000009.11:g.102627585TA[11], NG_028910.1:g.48449TA[6], NG_028910.1:g.48449TA[7], NG_028910.1:g.48449TA[9], NG_028910.1:g.48449TA[10], NG_028910.1:g.48449TA[11], NM_006981.4:c.*1436TA[6], NM_006981.4:c.*1436TA[7], NM_006981.4:c.*1436TA[9], NM_006981.4:c.*1436TA[10], NM_006981.4:c.*1436TA[11], NM_006981.3:c.*1436TA[6], NM_006981.3:c.*1436TA[7], NM_006981.3:c.*1436TA[9], NM_006981.3:c.*1436TA[10], NM_006981.3:c.*1436TA[11], NM_173200.3:c.*1436TA[6], NM_173200.3:c.*1436TA[7], NM_173200.3:c.*1436TA[9], NM_173200.3:c.*1436TA[10], NM_173200.3:c.*1436TA[11], NM_173200.2:c.*1436TA[6], NM_173200.2:c.*1436TA[7], NM_173200.2:c.*1436TA[9], NM_173200.2:c.*1436TA[10], NM_173200.2:c.*1436TA[11], XM_017015162.2:c.*1436TA[6], XM_017015162.2:c.*1436TA[7], XM_017015162.2:c.*1436TA[9], XM_017015162.2:c.*1436TA[10], XM_017015162.2:c.*1436TA[11], XM_017015162.1:c.*1436TA[6], XM_017015162.1:c.*1436TA[7], XM_017015162.1:c.*1436TA[9], XM_017015162.1:c.*1436TA[10], XM_017015162.1:c.*1436TA[11], NM_173198.1:c.*1436TA[6], NM_173198.1:c.*1436TA[7], NM_173198.1:c.*1436TA[9], NM_173198.1:c.*1436TA[10], NM_173198.1:c.*1436TA[11]

Select item 14913958922.

rs1491395892 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 9:99843681 (GRCh38)
9:102605963 (GRCh37)
Canonical SPDI:: NC_000009.12:99843680:AT:
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000098/11 (GnomAD)
HGVS:: NC_000009.12:g.99843681_99843682del, NC_000009.11:g.102605963_102605964del, NG_028910.1:g.26827_26828del

Select item 14913028623.

rs1491302862 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 9:99860214 (GRCh38)
9:102622496 (GRCh37)
Canonical SPDI:: NC_000009.12:99860213:GT:
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000285/4 (ALFA)
-=0.000465/123 (TOPMED)
-=0.000599/3 (1000Genomes)
-=0.000805/86 (GnomAD)
HGVS:: NC_000009.12:g.99860214_99860215del, NC_000009.11:g.102622496_102622497del, NG_028910.1:g.43360_43361del

Select item 14910256454.

rs1491025645 has merged into rs748013375 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>- [Show Flanks]
Chromosome:: 9:99841734 (GRCh38)
9:102604016 (GRCh37)
Canonical SPDI:: NC_000009.12:99841732:GGG:G
Gene:: NR4A3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000015/2 (GnomAD)
HGVS:: NC_000009.12:g.99841734_99841735del, NC_000009.11:g.102604016_102604017del, NG_028910.1:g.24880_24881del

Select item 14909957015.

rs1490995701 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:99831502 (GRCh38)
9:102593784 (GRCh37)
Canonical SPDI:: NC_000009.12:99831501:T:G
Gene:: NR4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.99831502T>G, NC_000009.11:g.102593784T>G, NG_028910.1:g.14648T>G

Select item 14909232546.

rs1490923254 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:99850747 (GRCh38)
9:102613029 (GRCh37)
Canonical SPDI:: NC_000009.12:99850746:T:C
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.99850747T>C, NC_000009.11:g.102613029T>C, NG_028910.1:g.33893T>C

Select item 14909008957.

rs1490900895 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:99851368 (GRCh38)
9:102613650 (GRCh37)
Canonical SPDI:: NC_000009.12:99851367:G:A
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.99851368G>A, NC_000009.11:g.102613650G>A, NG_028910.1:g.34514G>A

Select item 14908343758.

rs1490834375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:99860366 (GRCh38)
9:102622648 (GRCh37)
Canonical SPDI:: NC_000009.12:99860365:T:C
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.99860366T>C, NC_000009.11:g.102622648T>C, NG_028910.1:g.43512T>C

Select item 14907398359.

rs1490739835 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:99839865 (GRCh38)
9:102602147 (GRCh37)
Canonical SPDI:: NC_000009.12:99839864:C:T
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.99839865C>T, NC_000009.11:g.102602147C>T, NG_028910.1:g.23011C>T

Select item 149064553810.

rs1490645538 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:99822067 (GRCh38)
9:102584349 (GRCh37)
Canonical SPDI:: NC_000009.12:99822066:C:T
Gene:: NR4A3 (Varview)
Functional Consequence:: 5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.99822067C>T, NC_000009.11:g.102584349C>T, NG_028910.1:g.5213C>T, NM_006981.4:c.-517C>T, NM_006981.3:c.-517C>T, NM_173199.4:c.-517C>T, NM_173199.3:c.-517C>T, NM_173199.2:c.-517C>T, NM_173200.3:c.-556C>T, NM_173200.2:c.-556C>T, NM_173198.1:c.-1264C>T

Select item 149061563611.

rs1490615636 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:99829819 (GRCh38)
9:102592101 (GRCh37)
Canonical SPDI:: NC_000009.12:99829818:G:T
Gene:: NR4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.99829819G>T, NC_000009.11:g.102592101G>T, NG_028910.1:g.12965G>T

Select item 149061225012.

rs1490612250 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 9:99839993 (GRCh38)
9:102602276 (GRCh37)
Canonical SPDI:: NC_000009.12:99839993:AAAAAA:AAAAAAA
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.99839999dup, NC_000009.11:g.102602281dup, NG_028910.1:g.23145dup

Select item 149048380413.

rs1490483804 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:99849139 (GRCh38)
9:102611421 (GRCh37)
Canonical SPDI:: NC_000009.12:99849138:G:A
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.99849139G>A, NC_000009.11:g.102611421G>A, NG_028910.1:g.32285G>A

Select item 149041637314.

rs1490416373 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:99827119 (GRCh38)
9:102589401 (GRCh37)
Canonical SPDI:: NC_000009.12:99827118:A:G
Gene:: NR4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.99827119A>G, NC_000009.11:g.102589401A>G, NG_028910.1:g.10265A>G

Select item 149026983515.

rs1490269835 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:99823907 (GRCh38)
9:102586189 (GRCh37)
Canonical SPDI:: NC_000009.12:99823906:C:T
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.99823907C>T, NC_000009.11:g.102586189C>T, NG_028910.1:g.7053C>T

Select item 149004688816.

rs1490046888 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:99849566 (GRCh38)
9:102611848 (GRCh37)
Canonical SPDI:: NC_000009.12:99849565:C:G,NC_000009.12:99849565:C:T
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00011/2 (ALFA)
T=0.00045/2 (Estonian)
HGVS:: NC_000009.12:g.99849566C>G, NC_000009.12:g.99849566C>T, NC_000009.11:g.102611848C>G, NC_000009.11:g.102611848C>T, NG_028910.1:g.32712C>G, NG_028910.1:g.32712C>T

Select item 148996457617.

rs1489964576 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:99862102 (GRCh38)
9:102624384 (GRCh37)
Canonical SPDI:: NC_000009.12:99862101:A:C
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.99862102A>C, NC_000009.11:g.102624384A>C, NG_028910.1:g.45248A>C

Select item 148993771618.

rs1489937716 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:99857012 (GRCh38)
9:102619294 (GRCh37)
Canonical SPDI:: NC_000009.12:99857011:T:G
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.99857012T>G, NC_000009.11:g.102619294T>G, NG_028910.1:g.40158T>G

Select item 148990584519.

rs1489905845 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:99841745 (GRCh38)
9:102604027 (GRCh37)
Canonical SPDI:: NC_000009.12:99841744:C:T
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000035/4 (GnomAD)
HGVS:: NC_000009.12:g.99841745C>T, NC_000009.11:g.102604027C>T, NG_028910.1:g.24891C>T

Select item 148990302020.

rs1489903020 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:99853570 (GRCh38)
9:102615852 (GRCh37)
Canonical SPDI:: NC_000009.12:99853569:T:C
Gene:: NR4A3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00017/2 (ALFA)
C=0.00006/3 (GnomAD)
HGVS:: NC_000009.12:g.99853570T>C, NC_000009.11:g.102615852T>C, NG_028910.1:g.36716T>C