SNP Links for Gene (Select 80039) - SNP

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Select item 14904343831.

rs1490434383 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:18526423 (GRCh38)
17:18429737 (GRCh37)
Canonical SPDI:: NC_000017.11:18526422:G:C
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000017.11:g.18526423G>C, NC_000017.10:g.18429737G>C, NM_024974.2:c.381C>G, NR_170998.1:n.424C>G, NR_026809.1:n.424C>G, NM_024974.1:c.381C>G

Select item 14883863972.

rs1488386397 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 17:18527364 (GRCh38)
17:18430678 (GRCh37)
Canonical SPDI:: NC_000017.11:18527363:T:C,NC_000017.11:18527363:T:G
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000009/1 (GnomAD)
HGVS:: NC_000017.11:g.18527364T>C, NC_000017.11:g.18527364T>G, NC_000017.10:g.18430678T>C, NC_000017.10:g.18430678T>G

Select item 14880606473.

rs1488060647 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:18525957 (GRCh38)
17:18429271 (GRCh37)
Canonical SPDI:: NC_000017.11:18525956:T:C
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000009/1 (GnomAD)
HGVS:: NC_000017.11:g.18525957T>C, NC_000017.10:g.18429271T>C, NM_024974.2:c.*337A>G, NR_170998.1:n.890A>G, NR_026809.1:n.890A>G, NM_024974.1:c.*337A>G

Select item 14877677164.

rs1487767716 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:18527995 (GRCh38)
17:18431309 (GRCh37)
Canonical SPDI:: NC_000017.11:18527994:C:T
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.18527995C>T, NC_000017.10:g.18431309C>T, NG_001590.3:g.537C>T

Select item 14876951975.

rs1487695197 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:18526480 (GRCh38)
17:18429794 (GRCh37)
Canonical SPDI:: NC_000017.11:18526479:G:C
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000017.11:g.18526480G>C, NC_000017.10:g.18429794G>C, NM_024974.2:c.324C>G, NR_170998.1:n.367C>G, NR_026809.1:n.367C>G, NM_024974.1:c.324C>G

Select item 14875547756.

rs1487554775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:18526638 (GRCh38)
17:18429952 (GRCh37)
Canonical SPDI:: NC_000017.11:18526637:G:A,NC_000017.11:18526637:G:C
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00004/1 (TOMMO)
HGVS:: NC_000017.11:g.18526638G>A, NC_000017.11:g.18526638G>C, NC_000017.10:g.18429952G>A, NC_000017.10:g.18429952G>C, NM_024974.2:c.166C>T, NM_024974.2:c.166C>G, NR_170998.1:n.209C>T, NR_170998.1:n.209C>G, NR_026809.1:n.209C>T, NR_026809.1:n.209C>G, NM_024974.1:c.166C>T, NM_024974.1:c.166C>G

Select item 14864230437.

rs1486423043 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:18525833 (GRCh38)
17:18429147 (GRCh37)
Canonical SPDI:: NC_000017.11:18525832:A:T
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.18525833A>T, NC_000017.10:g.18429147A>T, NM_024974.2:c.*461T>A, NR_170998.1:n.1014T>A, NR_026809.1:n.1014T>A, NM_024974.1:c.*461T>A

Select item 14861853588.

rs1486185358 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:18525202 (GRCh38)
17:18428516 (GRCh37)
Canonical SPDI:: NC_000017.11:18525201:G:T
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.18525202G>T, NC_000017.10:g.18428516G>T, NM_024974.2:c.*1092C>A, NR_170998.1:n.1645C>A, NR_026809.1:n.1645C>A, NM_024974.1:c.*1092C>A

Select item 14861225059.

rs1486122505 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:18526300 (GRCh38)
17:18429614 (GRCh37)
Canonical SPDI:: NC_000017.11:18526299:T:C
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.18526300T>C, NC_000017.10:g.18429614T>C, NM_024974.2:c.504A>G, NR_170998.1:n.547A>G, NR_026809.1:n.547A>G, NM_024974.1:c.504A>G

Select item 148518255910.

rs1485182559 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAA>- [Show Flanks]
Chromosome:: 17:18526145 (GRCh38)
17:18429459 (GRCh37)
Canonical SPDI:: NC_000017.11:18526142:AACAA:AA
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000017.11:g.18526145_18526147del, NC_000017.10:g.18429459_18429461del, NM_024974.2:c.*149_*151del, NR_170998.1:n.702_704del, NR_026809.1:n.702_704del, NM_024974.1:c.*149_*151del

Select item 148440115511.

rs1484401155 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 17:18528180 (GRCh38)
17:18431494 (GRCh37)
Canonical SPDI:: NC_000017.11:18528179:A:C,NC_000017.11:18528179:A:G
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
C=0.000027/3 (GnomAD)
HGVS:: NC_000017.11:g.18528180A>C, NC_000017.11:g.18528180A>G, NC_000017.10:g.18431494A>C, NC_000017.10:g.18431494A>G, NG_001590.3:g.722A>C, NG_001590.3:g.722A>G

Select item 148361346312.

rs1483613463 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:18527576 (GRCh38)
17:18430890 (GRCh37)
Canonical SPDI:: NC_000017.11:18527575:C:T
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000009/1 (GnomAD)
HGVS:: NC_000017.11:g.18527576C>T, NC_000017.10:g.18430890C>T, NG_001590.3:g.118C>T

Select item 148315813513.

rs1483158135 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:18524360 (GRCh38)
17:18427674 (GRCh37)
Canonical SPDI:: NC_000017.11:18524359:G:A
Gene:: FAM106A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by cluster
MAF:: A=0.000009/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000017.11:g.18524360G>A, NC_000017.10:g.18427674G>A

Select item 148312772414.

rs1483127724 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 17:18527114 (GRCh38)
17:18430428 (GRCh37)
Canonical SPDI:: NC_000017.11:18527113:A:C,NC_000017.11:18527113:A:T
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.00002/2 (GnomAD)
HGVS:: NC_000017.11:g.18527114A>C, NC_000017.11:g.18527114A>T, NC_000017.10:g.18430428A>C, NC_000017.10:g.18430428A>T

Select item 148291776015.

rs1482917760 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:18524173 (GRCh38)
17:18427487 (GRCh37)
Canonical SPDI:: NC_000017.11:18524172:G:A
Gene:: FAM106A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.18524173G>A, NC_000017.10:g.18427487G>A

Select item 148282476516.

rs1482824765 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:18525366 (GRCh38)
17:18428680 (GRCh37)
Canonical SPDI:: NC_000017.11:18525365:G:A
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.18525366G>A, NC_000017.10:g.18428680G>A, NM_024974.2:c.*928C>T, NR_170998.1:n.1481C>T, NR_026809.1:n.1481C>T, NM_024974.1:c.*928C>T

Select item 148195593717.

rs1481955937 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:18526669 (GRCh38)
17:18429984 (GRCh37)
Canonical SPDI:: NC_000017.11:18526669::G
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000017.11:g.18526669_18526670insG, NC_000017.10:g.18429983_18429984insG, NM_024974.2:c.134_135insC, NR_170998.1:n.177_178insC, NR_026809.1:n.177_178insC, NM_024974.1:c.134_135insC

Select item 148150881718.

rs1481508817 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 17:18526268 (GRCh38)
17:18429582 (GRCh37)
Canonical SPDI:: NC_000017.11:18526266:GAG:G
Gene:: FAM106A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: -=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.18526268_18526269del, NC_000017.10:g.18429582_18429583del, NM_024974.2:c.*26_*27del, NR_170998.1:n.579_580del, NR_026809.1:n.579_580del, NM_024974.1:c.*26_*27del

Select item 148115991619.

rs1481159916 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>T
Chromosome:: no mapping
Canonical SPDI:

Select item 148104236920.

rs1481042369 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 17:18527485 (GRCh38)
17:18430799 (GRCh37)
Canonical SPDI:: NC_000017.11:18527484:A:C,NC_000017.11:18527484:A:G
Gene:: FAM106A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.18527485A>C, NC_000017.11:g.18527485A>G, NC_000017.10:g.18430799A>C, NC_000017.10:g.18430799A>G, NG_001590.3:g.27A>C, NG_001590.3:g.27A>G

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