SNP Links for Gene (Select 79917) - SNP

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49164208 (GRCh38)
X:49020546 (GRCh37)
Canonical SPDI:: NC_000023.11:49164207:G:A
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.49164208G>A, NW_004070880.2:g.1403637G>A, NG_070985.1:g.362G>A, NW_025791820.1:g.323159G>A, NC_000023.10:g.49020546G>A, NM_001099680.1:c.-459G>A

Select item 14868145426.

rs1486814542 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:49163588 (GRCh38)
X:49019926 (GRCh37)
Canonical SPDI:: NC_000023.11:49163587:C:G,NC_000023.11:49163587:C:T
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
G=0.000135/2 (TOMMO)
HGVS:: NC_000023.11:g.49163588C>G, NC_000023.11:g.49163588C>T, NW_004070880.2:g.1403017C>G, NW_004070880.2:g.1403017C>T, NC_000023.10:g.49019926C>G, NC_000023.10:g.49019926C>T, NW_025791820.1:g.322539C>G, NW_025791820.1:g.322539C>T

Select item 14867446297.

rs1486744629 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:49166938 (GRCh38)
X:49023277 (GRCh37)
Canonical SPDI:: NC_000023.11:49166937:G:A,NC_000023.11:49166937:G:C
Gene:: MAGIX (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.49166938G>A, NC_000023.11:g.49166938G>C, NW_004070880.2:g.1406367G>A, NW_004070880.2:g.1406367G>C, NG_016420.2:g.42G>A, NG_016420.2:g.42G>C, NG_016420.1:g.94G>A, NG_016420.1:g.94G>C, NG_070986.1:g.673G>A, NG_070986.1:g.673G>C, NW_025791820.1:g.325889G>A, NW_025791820.1:g.325889G>C, NC_000023.10:g.49023277G>A, NC_000023.10:g.49023277G>C, NM_024859.4:c.*539G>A, NM_024859.4:c.*539G>C, NM_024859.3:c.*539G>A, NM_024859.3:c.*539G>C, NM_024859.2:c.*539G>A, NM_024859.2:c.*539G>C, NM_001099681.2:c.*539G>A, NM_001099681.2:c.*539G>C, NM_001099681.1:c.*539G>A, NM_001099681.1:c.*539G>C, NM_001099682.2:c.*539G>A, NM_001099682.2:c.*539G>C, NM_001099682.1:c.*539G>A, NM_001099682.1:c.*539G>C, NM_001395401.1:c.*539G>A, NM_001395401.1:c.*539G>C, NM_001099680.1:c.*539G>A, NM_001099680.1:c.*539G>C

Select item 14866767508.

rs1486676750 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:49161761 (GRCh38)
X:49014818 (GRCh37)
Canonical SPDI:: NC_000023.11:49161760:T:C
Gene:: MAGIX (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49161761T>C, NW_004070880.2:g.1401190T>C, NW_025791820.1:g.320712T>C, NC_000023.10:g.49014818A>G

Select item 14866058719.

rs1486605871 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49163152 (GRCh38)
X:49019490 (GRCh37)
Canonical SPDI:: NC_000023.11:49163151:G:A
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.00003/3 (GnomAD)
HGVS:: NC_000023.11:g.49163152G>A, NW_004070880.2:g.1402581G>A, NC_000023.10:g.49019490G>A, NW_025791820.1:g.322103G>A

Select item 148598780110.

rs1485987801 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49167507 (GRCh38)
X:49023846 (GRCh37)
Canonical SPDI:: NC_000023.11:49167506:G:A
Gene:: MAGIX (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.49167507G>A, NW_004070880.2:g.1406936G>A, NG_016420.2:g.611G>A, NG_016420.1:g.663G>A, NG_070987.1:g.442G>A, NW_025791820.1:g.326458G>A, NC_000023.10:g.49023846G>A, NM_024859.4:c.*1108G>A, NM_024859.3:c.*1108G>A, NM_001099681.2:c.*1108G>A, NM_001099682.2:c.*1108G>A, NM_001395401.1:c.*1108G>A

Select item 148488522911.

rs1484885229 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:49162911 (GRCh38)
X:49019249 (GRCh37)
Canonical SPDI:: NC_000023.11:49162910:G:C
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000356/5 (ALFA)
C=0.000314/83 (TOPMED)
C=0.000408/43 (GnomAD)
HGVS:: NC_000023.11:g.49162911G>C, NW_004070880.2:g.1402340G>C, NC_000023.10:g.49019249G>C, NW_025791820.1:g.321862G>C, NM_024859.4:c.22G>C, NM_024859.3:c.22G>C, NM_024859.2:c.22G>C, NM_001099681.2:c.22G>C, NM_001099681.1:c.22G>C, NM_001099682.2:c.22G>C, NM_001099682.1:c.22G>C, NP_079135.3:p.Ala8Pro, NP_001093151.2:p.Ala8Pro, NP_001093152.2:p.Ala8Pro

Select item 148455052712.

rs1484550527 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49165958 (GRCh38)
X:49022297 (GRCh37)
Canonical SPDI:: NC_000023.11:49165957:G:A
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49165958G>A, NW_004070880.2:g.1405387G>A, NW_025791820.1:g.324909G>A, NC_000023.10:g.49022297G>A

Select item 148345788313.

rs1483457883 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:49168252 (GRCh38)
X:49024591 (GRCh37)
Canonical SPDI:: NC_000023.11:49168251:C:T
Gene:: MAGIX (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
T=0.00006/6 (GnomAD)
HGVS:: NC_000023.11:g.49168252C>T, NW_004070880.2:g.1407681C>T, NG_016420.2:g.1356C>T, NG_016420.1:g.1408C>T, NW_025791820.1:g.327203C>T, NC_000023.10:g.49024591C>T, NM_024859.4:c.*1853C>T, NM_001395401.1:c.*1853C>T

Select item 148340532114.

rs1483405321 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: X:49162995 (GRCh38)
X:49019333 (GRCh37)
Canonical SPDI:: NC_000023.11:49162994:C:A,NC_000023.11:49162994:C:G
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.49162995C>A, NC_000023.11:g.49162995C>G, NW_004070880.2:g.1402424C>A, NW_004070880.2:g.1402424C>G, NC_000023.10:g.49019333C>A, NC_000023.10:g.49019333C>G, NW_025791820.1:g.321946C>A, NW_025791820.1:g.321946C>G

Select item 148333546315.

rs1483335463 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:49164075 (GRCh38)
X:49020413 (GRCh37)
Canonical SPDI:: NC_000023.11:49164074:C:T
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000038/4 (GnomAD)
T=0.000053/14 (TOPMED)
HGVS:: NC_000023.11:g.49164075C>T, NW_004070880.2:g.1403504C>T, NG_070985.1:g.229C>T, NW_025791820.1:g.323026C>T, NC_000023.10:g.49020413C>T, NM_001099680.1:c.-592C>T

Select item 148164278316.

rs1481642783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:49161473 (GRCh38)
X:49015106 (GRCh37)
Canonical SPDI:: NC_000023.11:49161472:C:T
Gene:: MAGIX (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.49161473C>T, NW_004070880.2:g.1400902C>T, NW_025791820.1:g.320424C>T, NC_000023.10:g.49015106G>A

Select item 148120751317.

rs1481207513 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:49167903 (GRCh38)
X:49024242 (GRCh37)
Canonical SPDI:: NC_000023.11:49167902:T:C
Gene:: MAGIX (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49167903T>C, NW_004070880.2:g.1407332T>C, NG_016420.2:g.1007T>C, NG_016420.1:g.1059T>C, NC_000023.10:g.49024242T>C, NW_025791820.1:g.326854T>C, NM_024859.4:c.*1504T>C, NM_024859.3:c.*1504T>C, NM_001099681.2:c.*1504T>C, NM_001099682.2:c.*1504T>C, NM_001395401.1:c.*1504T>C

Select item 148098301218.

rs1480983012 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:49166532 (GRCh38)
X:49022871 (GRCh37)
Canonical SPDI:: NC_000023.11:49166531:T:G
Gene:: MAGIX (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.49166532T>G, NW_004070880.2:g.1405961T>G, NG_070986.1:g.267T>G, NW_025791820.1:g.325483T>G, NC_000023.10:g.49022871T>G, NM_024859.4:c.*133T>G, NM_024859.3:c.*133T>G, NM_024859.2:c.*133T>G, NM_001099681.2:c.*133T>G, NM_001099681.1:c.*133T>G, NM_001099682.2:c.*133T>G, NM_001099682.1:c.*133T>G, NM_001395401.1:c.*133T>G, NM_001099680.1:c.*133T>G

Select item 148032093519.

rs1480320935 has merged into rs146311189 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: X:49168483 (GRCh38)
X:49024822 (GRCh37)
Canonical SPDI:: NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000023.11:49168467:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: MAGIX (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000023.11:g.49168483_49168493del, NC_000023.11:g.49168484_49168493del, NC_000023.11:g.49168485_49168493del, NC_000023.11:g.49168486_49168493del, NC_000023.11:g.49168487_49168493del, NC_000023.11:g.49168489_49168493del, NC_000023.11:g.49168490_49168493del, NC_000023.11:g.49168491_49168493del, NC_000023.11:g.49168492_49168493del, NC_000023.11:g.49168493del, NC_000023.11:g.49168493dup, NC_000023.11:g.49168492_49168493dup, NC_000023.11:g.49168491_49168493dup, NC_000023.11:g.49168490_49168493dup, NC_000023.11:g.49168489_49168493dup, NW_004070880.2:g.1407912_1407922del, NW_004070880.2:g.1407913_1407922del, NW_004070880.2:g.1407914_1407922del, NW_004070880.2:g.1407915_1407922del, NW_004070880.2:g.1407916_1407922del, NW_004070880.2:g.1407918_1407922del, NW_004070880.2:g.1407919_1407922del, NW_004070880.2:g.1407920_1407922del, NW_004070880.2:g.1407921_1407922del, NW_004070880.2:g.1407922del, NW_004070880.2:g.1407922dup, NW_004070880.2:g.1407921_1407922dup, NW_004070880.2:g.1407920_1407922dup, NW_004070880.2:g.1407919_1407922dup, NW_004070880.2:g.1407918_1407922dup, NG_016420.2:g.1587_1597del, NG_016420.2:g.1588_1597del, NG_016420.2:g.1589_1597del, NG_016420.2:g.1590_1597del, NG_016420.2:g.1591_1597del, NG_016420.2:g.1593_1597del, NG_016420.2:g.1594_1597del, NG_016420.2:g.1595_1597del, NG_016420.2:g.1596_1597del, NG_016420.2:g.1597del, NG_016420.2:g.1597dup, NG_016420.2:g.1596_1597dup, NG_016420.2:g.1595_1597dup, NG_016420.2:g.1594_1597dup, NG_016420.2:g.1593_1597dup, NG_016420.1:g.1646_1647dup, NG_016420.1:g.1639_1647del, NG_016420.1:g.1640_1647del, NG_016420.1:g.1641_1647del, NG_016420.1:g.1642_1647del, NG_016420.1:g.1643_1647del, NG_016420.1:g.1645_1647del, NG_016420.1:g.1646_1647del, NG_016420.1:g.1647del, NG_016420.1:g.1647dup, NG_016420.1:g.1645_1647dup, NG_016420.1:g.1644_1647dup, NG_016420.1:g.1643_1647dup, NG_016420.1:g.1642_1647dup, NG_016420.1:g.1641_1647dup, NW_025791820.1:g.327434_327444del, NW_025791820.1:g.327435_327444del, NW_025791820.1:g.327436_327444del, NW_025791820.1:g.327437_327444del, NW_025791820.1:g.327438_327444del, NW_025791820.1:g.327440_327444del, NW_025791820.1:g.327441_327444del, NW_025791820.1:g.327442_327444del, NW_025791820.1:g.327443_327444del, NW_025791820.1:g.327444del, NW_025791820.1:g.327444dup, NW_025791820.1:g.327443_327444dup, NW_025791820.1:g.327442_327444dup, NW_025791820.1:g.327441_327444dup, NW_025791820.1:g.327440_327444dup, NC_000023.10:g.49024829_49024830dup, NC_000023.10:g.49024822_49024830del, NC_000023.10:g.49024823_49024830del, NC_000023.10:g.49024824_49024830del, NC_000023.10:g.49024825_49024830del, NC_000023.10:g.49024826_49024830del, NC_000023.10:g.49024828_49024830del, NC_000023.10:g.49024829_49024830del, NC_000023.10:g.49024830del, NC_000023.10:g.49024830dup, NC_000023.10:g.49024828_49024830dup, NC_000023.10:g.49024827_49024830dup, NC_000023.10:g.49024826_49024830dup, NC_000023.10:g.49024825_49024830dup, NC_000023.10:g.49024824_49024830dup, NM_024859.4:c.*2084_*2094del, NM_024859.4:c.*2085_*2094del, NM_024859.4:c.*2086_*2094del, NM_024859.4:c.*2087_*2094del, NM_024859.4:c.*2088_*2094del, NM_024859.4:c.*2090_*2094del, NM_024859.4:c.*2091_*2094del, NM_024859.4:c.*2092_*2094del, NM_024859.4:c.*2093_*2094del, NM_024859.4:c.*2094del, NM_024859.4:c.*2094dup, NM_024859.4:c.*2093_*2094dup, NM_024859.4:c.*2092_*2094dup, NM_024859.4:c.*2091_*2094dup, NM_024859.4:c.*2090_*2094dup, NM_001395401.1:c.*2084_*2094del, NM_001395401.1:c.*2085_*2094del, NM_001395401.1:c.*2086_*2094del, NM_001395401.1:c.*2087_*2094del, NM_001395401.1:c.*2088_*2094del, NM_001395401.1:c.*2090_*2094del, NM_001395401.1:c.*2091_*2094del, NM_001395401.1:c.*2092_*2094del, NM_001395401.1:c.*2093_*2094del, NM_001395401.1:c.*2094del, NM_001395401.1:c.*2094dup, NM_001395401.1:c.*2093_*2094dup, NM_001395401.1:c.*2092_*2094dup, NM_001395401.1:c.*2091_*2094dup, NM_001395401.1:c.*2090_*2094dup

Select item 148023319520.

rs1480233195 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:49163322 (GRCh38)
X:49019660 (GRCh37)
Canonical SPDI:: NC_000023.11:49163321:T:G
Gene:: MAGIX (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00219/26 (ALFA)
G=0.00111/24 (TOMMO)
G=0.03857/110 (KOREAN)
HGVS:: NC_000023.11:g.49163322T>G, NW_004070880.2:g.1402751T>G, NC_000023.10:g.49019660T>G, NW_025791820.1:g.322273T>G

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