SNP Links for Gene (Select 79544) - SNP

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Select item 14914081571.

rs1491408157 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 14:19929405 (GRCh38)
14:20397565 (GRCh37)
Canonical SPDI:: NC_000014.9:19929405:C:CAC
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: CA=0.000008/1 (GnomAD)
HGVS:: NC_000014.9:g.19929406_19929407insAC, NW_025791796.1:g.132088_132089insAC, NC_000014.8:g.20397565_20397566insAC

Select item 14912704292.

rs1491270429 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:19924400 (GRCh38)
14:20392559 (GRCh37)
Canonical SPDI:: NC_000014.9:19924399:CA:
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00093/11 (ALFA)
-=0.00038/10 (TOMMO)
HGVS:: NC_000014.9:g.19924400_19924401del, NW_025791796.1:g.127082_127083del, NC_000014.8:g.20392559_20392560del

Select item 14912662333.

rs1491266233 has merged into rs1491109070 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>-,CGCG [Show Flanks]
Chromosome:: 14:19929406 (GRCh38)
14:20397565 (GRCh37)
Canonical SPDI:: NC_000014.9:19929404:GCG:G,NC_000014.9:19929404:GCG:GCGCG
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGCG=0./0 (ALFA)
GC=0.00004/1 (TOMMO)
-=0.07421/286 (ALSPAC)
-=0.07524/279 (TWINSUK)
HGVS:: NC_000014.9:g.19929406_19929407del, NC_000014.9:g.19929406_19929407dup, NW_025791796.1:g.132088_132089del, NW_025791796.1:g.132088_132089dup, NC_000014.8:g.20397565_20397566del, NC_000014.8:g.20397565_20397566dup

Select item 14911090704.

rs1491109070 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>-,CGCG [Show Flanks]
Chromosome:: 14:19929406 (GRCh38)
14:20397565 (GRCh37)
Canonical SPDI:: NC_000014.9:19929404:GCG:G,NC_000014.9:19929404:GCG:GCGCG
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGCG=0./0 (ALFA)
GC=0.00004/1 (TOMMO)
-=0.07421/286 (ALSPAC)
-=0.07524/279 (TWINSUK)
HGVS:: NC_000014.9:g.19929406_19929407del, NC_000014.9:g.19929406_19929407dup, NW_025791796.1:g.132088_132089del, NW_025791796.1:g.132088_132089dup, NC_000014.8:g.20397565_20397566del, NC_000014.8:g.20397565_20397566dup

Select item 14910743875.

rs1491074387 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:19922078 (GRCh38)
14:20390237 (GRCh37)
Canonical SPDI:: NC_000014.9:19922077:CA:
Gene:: OR4K5 (Varview), OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000084/1 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000143/17 (GnomAD)
HGVS:: NC_000014.9:g.19922078_19922079del, NW_025791796.1:g.124760_124761del, NC_000014.8:g.20390237_20390238del

Select item 14909925826.

rs1490992582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:19932098 (GRCh38)
14:20400257 (GRCh37)
Canonical SPDI:: NC_000014.9:19932097:G:A
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.19932098G>A, NW_025791796.1:g.134780G>A, NC_000014.8:g.20400257G>A

Select item 14909473437.

rs1490947343 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 14:19934776 (GRCh38)
14:20402935 (GRCh37)
Canonical SPDI:: NC_000014.9:19934775:T:C,NC_000014.9:19934775:T:G
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.19934776T>C, NC_000014.9:g.19934776T>G, NW_025791796.1:g.137458T>C, NW_025791796.1:g.137458T>G, NC_000014.8:g.20402935T>C, NC_000014.8:g.20402935T>G

Select item 14909011088.

rs1490901108 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:19930272 (GRCh38)
14:20398431 (GRCh37)
Canonical SPDI:: NC_000014.9:19930271:A:T
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.19930272A>T, NW_025791796.1:g.132954A>T, NC_000014.8:g.20398431A>T

Select item 14908492999.

rs1490849299 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:19922064 (GRCh38)
14:20390223 (GRCh37)
Canonical SPDI:: NC_000014.9:19922063:G:C
Gene:: OR4K5 (Varview), OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000014.9:g.19922064G>C, NW_025791796.1:g.124746G>C, NC_000014.8:g.20390223G>C

Select item 149055469810.

rs1490554698 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATT [Show Flanks]
Chromosome:: 14:19928282 (GRCh38)
14:20396442 (GRCh37)
Canonical SPDI:: NC_000014.9:19928282:TTATT:TTATTATT
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTATTATT=0./0 (ALFA)
HGVS:: NC_000014.9:g.19928285_19928287dup, NW_025791796.1:g.130967_130969dup, NC_000014.8:g.20396444_20396446dup

Select item 149050558311.

rs1490505583 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 14:19934454 (GRCh38)
14:20402613 (GRCh37)
Canonical SPDI:: NC_000014.9:19934453:T:A
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.19934454T>A, NW_025791796.1:g.137136T>A, NC_000014.8:g.20402613T>A

Select item 149048308812.

rs1490483088 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:19923062 (GRCh38)
14:20391221 (GRCh37)
Canonical SPDI:: NC_000014.9:19923061:A:G
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.19923062A>G, NW_025791796.1:g.125744A>G, NC_000014.8:g.20391221A>G

Select item 149045562813.

rs1490455628 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:19935075 (GRCh38)
14:20403234 (GRCh37)
Canonical SPDI:: NC_000014.9:19935074:C:T
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.19935075C>T, NW_025791796.1:g.137757C>T, NC_000014.8:g.20403234C>T

Select item 149017395214.

rs1490173952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 14:19931205 (GRCh38)
14:20399364 (GRCh37)
Canonical SPDI:: NC_000014.9:19931204:C:A,NC_000014.9:19931204:C:G
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.19931205C>A, NC_000014.9:g.19931205C>G, NW_025791796.1:g.133887C>A, NW_025791796.1:g.133887C>G, NC_000014.8:g.20399364C>A, NC_000014.8:g.20399364C>G

Select item 149015854915.

rs1490158549 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 14:19922437 (GRCh38)
14:20390596 (GRCh37)
Canonical SPDI:: NC_000014.9:19922436:C:A,NC_000014.9:19922436:C:T
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.19922437C>A, NC_000014.9:g.19922437C>T, NW_025791796.1:g.125119C>A, NW_025791796.1:g.125119C>T, NC_000014.8:g.20390596C>A, NC_000014.8:g.20390596C>T

Select item 149008186716.

rs1490081867 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:19929465 (GRCh38)
14:20397624 (GRCh37)
Canonical SPDI:: NC_000014.9:19929464:T:C
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000014.9:g.19929465T>C, NW_025791796.1:g.132147T>C, NC_000014.8:g.20397624T>C

Select item 148969791217.

rs1489697912 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:19927798 (GRCh38)
14:20395957 (GRCh37)
Canonical SPDI:: NC_000014.9:19927797:C:A
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000014.9:g.19927798C>A, NW_025791796.1:g.130480C>A, NC_000014.8:g.20395957C>A

Select item 148963291518.

rs1489632915 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:19923472 (GRCh38)
14:20391631 (GRCh37)
Canonical SPDI:: NC_000014.9:19923471:A:T
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.19923472A>T, NW_025791796.1:g.126154A>T, NC_000014.8:g.20391631A>T

Select item 148963007119.

rs1489630071 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 14:19928700 (GRCh38)
14:20396859 (GRCh37)
Canonical SPDI:: NC_000014.9:19928699:T:A,NC_000014.9:19928699:T:C
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000014.9:g.19928700T>A, NC_000014.9:g.19928700T>C, NW_025791796.1:g.131382T>A, NW_025791796.1:g.131382T>C, NC_000014.8:g.20396859T>A, NC_000014.8:g.20396859T>C

Select item 148946584920.

rs1489465849 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:19932489 (GRCh38)
14:20400648 (GRCh37)
Canonical SPDI:: NC_000014.9:19932488:C:G
Gene:: OR4K1 (Varview), LOC124903278 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000043/6 (GnomAD)
HGVS:: NC_000014.9:g.19932489C>G, NW_025791796.1:g.135171C>G, NC_000014.8:g.20400648C>G