SNP Links for Gene (Select 79295) - SNP

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Select item 14900428821.

rs1490042882 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98263925 (GRCh38)
3:97982769 (GRCh37)
Canonical SPDI:: NC_000003.12:98263924:T:C
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000003.12:g.98263925T>C, NC_000003.11:g.97982769T>C

Select item 14895338422.

rs1489533842 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 3:98263431 (GRCh38)
3:97982276 (GRCh37)
Canonical SPDI:: NC_000003.12:98263431:TTT:TTTT
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000003.12:g.98263434dup, NC_000003.11:g.97982278dup

Select item 14882267753.

rs1488226775 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 3:98261730 (GRCh38)
3:97980574 (GRCh37)
Canonical SPDI:: NC_000003.12:98261729:T:A,NC_000003.12:98261729:T:C
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000015/2 (GnomAD)
HGVS:: NC_000003.12:g.98261730T>A, NC_000003.12:g.98261730T>C, NC_000003.11:g.97980574T>A, NC_000003.11:g.97980574T>C

Select item 14881184894.

rs1488118489 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:98262058 (GRCh38)
3:97980902 (GRCh37)
Canonical SPDI:: NC_000003.12:98262057:A:C
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98262058A>C, NC_000003.11:g.97980902A>C

Select item 14864178935.

rs1486417893 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 3:98265091 (GRCh38)
3:97983935 (GRCh37)
Canonical SPDI:: NC_000003.12:98265090:C:A,NC_000003.12:98265090:C:G
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000043/1 (ALFA)
A=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98265091C>A, NC_000003.12:g.98265091C>G, NC_000003.11:g.97983935C>A, NC_000003.11:g.97983935C>G, NM_001005479.2:c.759C>A, NM_001005479.2:c.759C>G, NM_001005479.1:c.807C>A, NM_001005479.1:c.807C>G

Select item 14863625956.

rs1486362595 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:98262723 (GRCh38)
3:97981567 (GRCh37)
Canonical SPDI:: NC_000003.12:98262722:T:G
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98262723T>G, NC_000003.11:g.97981567T>G, XR_001740814.2:n.955A>C

Select item 14862876507.

rs1486287650 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98263863 (GRCh38)
3:97982707 (GRCh37)
Canonical SPDI:: NC_000003.12:98263862:A:G
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98263863A>G, NC_000003.11:g.97982707A>G

Select item 14862575438.

rs1486257543 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:98261783 (GRCh38)
3:97980627 (GRCh37)
Canonical SPDI:: NC_000003.12:98261782:C:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98261783C>G, NC_000003.11:g.97980627C>G

Select item 14848633749.

rs1484863374 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98261273 (GRCh38)
3:97980117 (GRCh37)
Canonical SPDI:: NC_000003.12:98261272:C:T
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98261273C>T, NC_000003.11:g.97980117C>T

Select item 148276907310.

rs1482769073 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:98261997 (GRCh38)
3:97980841 (GRCh37)
Canonical SPDI:: NC_000003.12:98261996:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98261997G>C, NC_000003.11:g.97980841G>C

Select item 148220898311.

rs1482208983 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98262498 (GRCh38)
3:97981342 (GRCh37)
Canonical SPDI:: NC_000003.12:98262497:T:C
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000003.12:g.98262498T>C, NC_000003.11:g.97981342T>C

Select item 148095159712.

rs1480951597 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98264467 (GRCh38)
3:97983311 (GRCh37)
Canonical SPDI:: NC_000003.12:98264466:A:G
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000142/2 (TOMMO)
HGVS:: NC_000003.12:g.98264467A>G, NC_000003.11:g.97983311A>G, NM_001005479.2:c.135A>G, NM_001005479.1:c.183A>G

Select item 148089915713.

rs1480899157 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 3:98264980 (GRCh38)
3:97983824 (GRCh37)
Canonical SPDI:: NC_000003.12:98264976:TATAT:TAT
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,intron_variant,frameshift_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.98264978AT[1], NC_000003.11:g.97983822AT[1], NM_001005479.2:c.648_649del, NM_001005479.1:c.696_697del, NP_001005479.2:p.Ser217fs

Select item 148037548614.

rs1480375486 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:98264059 (GRCh38)
3:97982903 (GRCh37)
Canonical SPDI:: NC_000003.12:98264058:A:T
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98264059A>T, NC_000003.11:g.97982903A>T

Select item 147887971015.

rs1478879710 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:98265583 (GRCh38)
3:97984427 (GRCh37)
Canonical SPDI:: NC_000003.12:98265582:G:A,NC_000003.12:98265582:G:C
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98265583G>A, NC_000003.12:g.98265583G>C, NC_000003.11:g.97984427G>A, NC_000003.11:g.97984427G>C

Select item 147827917216.

rs1478279172 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98263922 (GRCh38)
3:97982766 (GRCh37)
Canonical SPDI:: NC_000003.12:98263921:T:C
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98263922T>C, NC_000003.11:g.97982766T>C

Select item 147778745817.

rs1477787458 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:98261804 (GRCh38)
3:97980648 (GRCh37)
Canonical SPDI:: NC_000003.12:98261803:T:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98261804T>A, NC_000003.11:g.97980648T>A

Select item 147776439318.

rs1477764393 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98265097 (GRCh38)
3:97983941 (GRCh37)
Canonical SPDI:: NC_000003.12:98265096:C:T
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.98265097C>T, NC_000003.11:g.97983941C>T, NM_001005479.2:c.765C>T, NM_001005479.1:c.813C>T

Select item 147768037319.

rs1477680373 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:98264430 (GRCh38)
3:97983274 (GRCh37)
Canonical SPDI:: NC_000003.12:98264429:T:C
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: missense_variant,genic_downstream_transcript_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.98264430T>C, NC_000003.11:g.97983274T>C, NM_001005479.2:c.98T>C, NM_001005479.1:c.146T>C, NP_001005479.2:p.Val33Ala

Select item 147762804820.

rs1477628048 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:98263094 (GRCh38)
3:97981938 (GRCh37)
Canonical SPDI:: NC_000003.12:98263093:G:A
Gene:: OR5H6 (Varview), LOC105373999 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98263094G>A, NC_000003.11:g.97981938G>A, XR_001740814.2:n.584C>T, XR_001740814.1:n.584C>T

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