SNP Links for Gene (Select 79034) - SNP

Links from Gene

Items: 1 to 20 of 1000

<< First< Prev

Page of 50

Next >Last >>

Select item 14915531951.

rs1491553195 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 7:6606712 (GRCh38)
7:6646344 (GRCh37)
Canonical SPDI:: NC_000007.14:6606712:C:CC
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000015/2 (GnomAD)
HGVS:: NC_000007.14:g.6606713dup, NC_000007.13:g.6646344dup

Select item 14915481492.

rs1491548149 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 7:6608829 (GRCh38)
7:6648460 (GRCh37)
Canonical SPDI:: NC_000007.14:6608827:TAT:T
Gene:: INTS15 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.04645/551 (ALFA)
-=0.00022/3 (TOMMO)
-=0.04658/2273 (GnomAD)
HGVS:: NC_000007.14:g.6608829_6608830del, NC_000007.13:g.6648460_6648461del

Select item 14914540653.

rs1491454065 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 7:6606713 (GRCh38)
7:6646344 (GRCh37)
Canonical SPDI:: NC_000007.14:6606711:TCT:T
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000337/4 (ALFA)
-=0.000224/26 (GnomAD)
HGVS:: NC_000007.14:g.6606713_6606714del, NC_000007.13:g.6646344_6646345del

Select item 14914050204.

rs1491405020 has merged into rs71010904 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 7:6598797 (GRCh38)
7:6638428 (GRCh37)
Canonical SPDI:: NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000007.14:6598787:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
T=0.0101/4 (NorthernSweden)
HGVS:: NC_000007.14:g.6598797_6598801del, NC_000007.14:g.6598799_6598801del, NC_000007.14:g.6598800_6598801del, NC_000007.14:g.6598801del, NC_000007.14:g.6598801dup, NC_000007.14:g.6598800_6598801dup, NC_000007.14:g.6598799_6598801dup, NC_000007.14:g.6598794_6598801dup, NC_000007.13:g.6638428_6638432del, NC_000007.13:g.6638430_6638432del, NC_000007.13:g.6638431_6638432del, NC_000007.13:g.6638432del, NC_000007.13:g.6638432dup, NC_000007.13:g.6638431_6638432dup, NC_000007.13:g.6638430_6638432dup, NC_000007.13:g.6638425_6638432dup

Select item 14912270535.

rs1491227053 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->ATTTTTTTTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14910539316.

rs1491053931 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 7:6592182 (GRCh38)
7:6631813 (GRCh37)
Canonical SPDI:: NC_000007.14:6592179:AGAG:AG
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0./0 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.6592180AG[1], NC_000007.13:g.6631811AG[1]

Select item 14910354357.

rs1491035435 has merged into rs533558064 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 7:6593339 (GRCh38)
7:6632970 (GRCh37)
Canonical SPDI:: NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000007.14:6593329:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.09804/491 (1000Genomes)
-=0.3/12 (GENOME_DK)
HGVS:: NC_000007.14:g.6593339_6593348del, NC_000007.14:g.6593343_6593348del, NC_000007.14:g.6593344_6593348del, NC_000007.14:g.6593345_6593348del, NC_000007.14:g.6593346_6593348del, NC_000007.14:g.6593347_6593348del, NC_000007.14:g.6593348del, NC_000007.14:g.6593348dup, NC_000007.14:g.6593347_6593348dup, NC_000007.14:g.6593346_6593348dup, NC_000007.14:g.6593345_6593348dup, NC_000007.14:g.6593344_6593348dup, NC_000007.14:g.6593343_6593348dup, NC_000007.14:g.6593342_6593348dup, NC_000007.14:g.6593341_6593348dup, NC_000007.14:g.6593340_6593348dup, NC_000007.13:g.6632970_6632979del, NC_000007.13:g.6632974_6632979del, NC_000007.13:g.6632975_6632979del, NC_000007.13:g.6632976_6632979del, NC_000007.13:g.6632977_6632979del, NC_000007.13:g.6632978_6632979del, NC_000007.13:g.6632979del, NC_000007.13:g.6632979dup, NC_000007.13:g.6632978_6632979dup, NC_000007.13:g.6632977_6632979dup, NC_000007.13:g.6632976_6632979dup, NC_000007.13:g.6632975_6632979dup, NC_000007.13:g.6632974_6632979dup, NC_000007.13:g.6632973_6632979dup, NC_000007.13:g.6632972_6632979dup, NC_000007.13:g.6632971_6632979dup

Select item 14910218138.

rs1491021813 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 7:6598787 (GRCh38)
7:6638418 (GRCh37)
Canonical SPDI:: NC_000007.14:6598785:TAT:T
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.6598787_6598788del, NC_000007.13:g.6638418_6638419del

Select item 14908402969.

rs1490840296 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:6607001 (GRCh38)
7:6646632 (GRCh37)
Canonical SPDI:: NC_000007.14:6607000:G:C
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.6607001G>C, NC_000007.13:g.6646632G>C

Select item 149077782710.

rs1490777827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:6603283 (GRCh38)
7:6642914 (GRCh37)
Canonical SPDI:: NC_000007.14:6603282:C:A,NC_000007.14:6603282:C:T
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.6603283C>A, NC_000007.14:g.6603283C>T, NC_000007.13:g.6642914C>A, NC_000007.13:g.6642914C>T

Select item 149011505111.

rs1490115051 [Homo sapiens]

Variant type:: DEL
Alleles:: AAG>- [Show Flanks]
Chromosome:: 7:6602297 (GRCh38)
7:6641928 (GRCh37)
Canonical SPDI:: NC_000007.14:6602296:AAG:
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.6602297_6602299del, NC_000007.13:g.6641928_6641930del, NG_078291.1:g.80_82del

Select item 148996365012.

rs1489963650 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTG>- [Show Flanks]
Chromosome:: 7:6589076 (GRCh38)
7:6628707 (GRCh37)
Canonical SPDI:: NC_000007.14:6589071:CTTGCTTG:CTTG
Gene:: ZDHHC4 (Varview), INTS15 (Varview), LOC124901582 (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CTTGCTTG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.6589072CTTG[1], NC_000007.13:g.6628703CTTG[1], XM_005249796.4:c.*162CTTG[1], NM_018106.4:c.*162CTTG[1], NM_001134387.2:c.*162CTTG[1], NM_001134388.2:c.*162CTTG[1], NM_001134389.2:c.*162CTTG[1], XM_047420565.1:c.*162CTTG[1], XM_047420564.1:c.*162CTTG[1], XM_047420566.1:c.*162CTTG[1], XM_047420567.1:c.*162CTTG[1], XR_007060201.1:n.592CAAG[1]

Select item 148995284213.

rs1489952842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:6601895 (GRCh38)
7:6641526 (GRCh37)
Canonical SPDI:: NC_000007.14:6601894:G:A
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.6601895G>A, NC_000007.13:g.6641526G>A

Select item 148980648414.

rs1489806484 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:6588724 (GRCh38)
7:6628355 (GRCh37)
Canonical SPDI:: NC_000007.14:6588723:C:G
Gene:: ZDHHC4 (Varview), INTS15 (Varview), LOC124901582 (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,3_prime_UTR_variant,synonymous_variant,coding_sequence_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.6588724C>G, NC_000007.13:g.6628355C>G, XM_005249796.4:c.849C>G, XM_005249796.3:c.849C>G, XM_005249796.2:c.849C>G, XM_005249796.1:c.849C>G, NM_018106.4:c.849C>G, NM_018106.3:c.849C>G, NM_001134387.2:c.849C>G, NM_001134387.1:c.849C>G, NM_001134388.2:c.849C>G, NM_001134388.1:c.849C>G, NM_001134389.2:c.849C>G, NM_001134389.1:c.849C>G, XM_047420565.1:c.849C>G, XM_047420564.1:c.849C>G, NR_163912.1:n.1413C>G, XM_047420566.1:c.789C>G, XM_047420567.1:c.789C>G, NM_001371297.1:c.849C>G, NM_001371299.1:c.*221C>G, NM_001371294.1:c.849C>G, NM_001371295.1:c.849C>G, NR_163913.1:n.1195C>G, NM_001371292.1:c.894C>G, NM_001371296.1:c.849C>G, NM_001371298.1:c.789C>G, NM_001371293.1:c.849C>G

Select item 148965493015.

rs1489654930 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:6594997 (GRCh38)
7:6634628 (GRCh37)
Canonical SPDI:: NC_000007.14:6594996:G:A
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.6594997G>A, NC_000007.13:g.6634628G>A

Select item 148952682416.

rs1489526824 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:6607365 (GRCh38)
7:6646996 (GRCh37)
Canonical SPDI:: NC_000007.14:6607364:G:A
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.6607365G>A, NC_000007.13:g.6646996G>A

Select item 148951107417.

rs1489511074 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:6602317 (GRCh38)
7:6641948 (GRCh37)
Canonical SPDI:: NC_000007.14:6602316:A:G
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.6602317A>G, NC_000007.13:g.6641948A>G, NG_078291.1:g.100A>G

Select item 148946807218.

rs1489468072 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:6605899 (GRCh38)
7:6645530 (GRCh37)
Canonical SPDI:: NC_000007.14:6605898:A:G
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.6605899A>G, NC_000007.13:g.6645530A>G

Select item 148943176319.

rs1489431763 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:6588771 (GRCh38)
7:6628402 (GRCh37)
Canonical SPDI:: NC_000007.14:6588770:A:C,NC_000007.14:6588770:A:G
Gene:: ZDHHC4 (Varview), INTS15 (Varview), LOC124901582 (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,3_prime_UTR_variant,coding_sequence_variant,upstream_transcript_variant,missense_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
G=0.000546/1 (Korea1K)
HGVS:: NC_000007.14:g.6588771A>C, NC_000007.14:g.6588771A>G, NC_000007.13:g.6628402A>C, NC_000007.13:g.6628402A>G, XM_005249796.4:c.896A>C, XM_005249796.4:c.896A>G, XM_005249796.3:c.896A>C, XM_005249796.3:c.896A>G, XM_005249796.2:c.896A>C, XM_005249796.2:c.896A>G, XM_005249796.1:c.896A>C, XM_005249796.1:c.896A>G, NM_018106.4:c.896A>C, NM_018106.4:c.896A>G, NM_018106.3:c.896A>C, NM_018106.3:c.896A>G, NM_001134387.2:c.896A>C, NM_001134387.2:c.896A>G, NM_001134387.1:c.896A>C, NM_001134387.1:c.896A>G, NM_001134388.2:c.896A>C, NM_001134388.2:c.896A>G, NM_001134388.1:c.896A>C, NM_001134388.1:c.896A>G, NM_001134389.2:c.896A>C, NM_001134389.2:c.896A>G, NM_001134389.1:c.896A>C, NM_001134389.1:c.896A>G, XM_047420565.1:c.896A>C, XM_047420565.1:c.896A>G, XM_047420564.1:c.896A>C, XM_047420564.1:c.896A>G, NR_163912.1:n.1460A>C, NR_163912.1:n.1460A>G, XM_047420566.1:c.836A>C, XM_047420566.1:c.836A>G, XM_047420567.1:c.836A>C, XM_047420567.1:c.836A>G, NM_001371297.1:c.896A>C, NM_001371297.1:c.896A>G, NM_001371299.1:c.*268A>C, NM_001371299.1:c.*268A>G, NM_001371294.1:c.896A>C, NM_001371294.1:c.896A>G, NM_001371295.1:c.896A>C, NM_001371295.1:c.896A>G, NR_163913.1:n.1242A>C, NR_163913.1:n.1242A>G, NM_001371292.1:c.941A>C, NM_001371292.1:c.941A>G, NM_001371296.1:c.896A>C, NM_001371296.1:c.896A>G, NM_001371298.1:c.836A>C, NM_001371298.1:c.836A>G, NM_001371293.1:c.896A>C, NM_001371293.1:c.896A>G, XP_005249853.1:p.Gln299Pro, XP_005249853.1:p.Gln299Arg, NP_060576.1:p.Gln299Pro, NP_060576.1:p.Gln299Arg, NP_001127859.1:p.Gln299Pro, NP_001127859.1:p.Gln299Arg, NP_001127860.1:p.Gln299Pro, NP_001127860.1:p.Gln299Arg, NP_001127861.1:p.Gln299Pro, NP_001127861.1:p.Gln299Arg, XP_047276521.1:p.Gln299Pro, XP_047276521.1:p.Gln299Arg, XP_047276520.1:p.Gln299Pro, XP_047276520.1:p.Gln299Arg, XP_047276522.1:p.Gln279Pro, XP_047276522.1:p.Gln279Arg, XP_047276523.1:p.Gln279Pro, XP_047276523.1:p.Gln279Arg, NP_001358226.1:p.Gln299Pro, NP_001358226.1:p.Gln299Arg, NP_001358223.1:p.Gln299Pro, NP_001358223.1:p.Gln299Arg, NP_001358224.1:p.Gln299Pro, NP_001358224.1:p.Gln299Arg, NP_001358221.1:p.Gln314Pro, NP_001358221.1:p.Gln314Arg, NP_001358225.1:p.Gln299Pro, NP_001358225.1:p.Gln299Arg, NP_001358227.1:p.Gln279Pro, NP_001358227.1:p.Gln279Arg, NP_001358222.1:p.Gln299Pro, NP_001358222.1:p.Gln299Arg

Select item 148932576320.

rs1489325763 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 7:6605298 (GRCh38)
7:6644929 (GRCh37)
Canonical SPDI:: NC_000007.14:6605297:TTTTTTT:TTTTTT,NC_000007.14:6605297:TTTTTTT:TTTTTTTT
Gene:: INTS15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.6605304del, NC_000007.14:g.6605304dup, NC_000007.13:g.6644935del, NC_000007.13:g.6644935dup

<< First< Prev

Page of 50

Next >Last >>

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 1000

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity