SNP Links for Gene (Select 79004) - SNP

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Select item 14915172311.

rs1491517231 has merged into rs10654228 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT [Show Flanks]
Chromosome:: 10:102430143 (GRCh38)
10:104189900 (GRCh37)
Canonical SPDI:: NC_000010.11:102430131:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:102430131:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:102430131:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:102430131:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:102430131:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000010.11:g.102430143_102430144del, NC_000010.11:g.102430144del, NC_000010.11:g.102430144dup, NC_000010.11:g.102430143_102430144dup, NC_000010.11:g.102430142_102430144dup, NC_000010.10:g.104189900_104189901del, NC_000010.10:g.104189901del, NC_000010.10:g.104189901dup, NC_000010.10:g.104189900_104189901dup, NC_000010.10:g.104189899_104189901dup

Select item 14912832942.

rs1491283294 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 10:102430146 (GRCh38)
10:104189903 (GRCh37)
Canonical SPDI:: NC_000010.11:102430145:AT:
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00152/18 (ALFA)
-=0.01531/222 (GnomAD)
HGVS:: NC_000010.11:g.102430146_102430147del, NC_000010.10:g.104189903_104189904del

Select item 14909729333.

rs1490972933 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:102427011 (GRCh38)
10:104186768 (GRCh37)
Canonical SPDI:: NC_000010.11:102427010:T:A
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102427011T>A, NC_000010.10:g.104186768T>A

Select item 14907776404.

rs1490777640 [Homo sapiens]

Variant type:: SNV:
Alleles:: TA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14906209465.

rs1490620946 has merged into rs57965979 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 10:102434387 (GRCh38)
10:104194144 (GRCh37)
Canonical SPDI:: NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:102434374:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CUEDC2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000010.11:g.102434387_102434398del, NC_000010.11:g.102434388_102434398del, NC_000010.11:g.102434389_102434398del, NC_000010.11:g.102434390_102434398del, NC_000010.11:g.102434391_102434398del, NC_000010.11:g.102434392_102434398del, NC_000010.11:g.102434393_102434398del, NC_000010.11:g.102434394_102434398del, NC_000010.11:g.102434395_102434398del, NC_000010.11:g.102434396_102434398del, NC_000010.11:g.102434397_102434398del, NC_000010.11:g.102434398del, NC_000010.11:g.102434398dup, NC_000010.11:g.102434397_102434398dup, NC_000010.11:g.102434396_102434398dup, NC_000010.11:g.102434395_102434398dup, NC_000010.11:g.102434394_102434398dup, NC_000010.11:g.102434393_102434398dup, NC_000010.11:g.102434392_102434398dup, NC_000010.11:g.102434391_102434398dup, NC_000010.11:g.102434390_102434398dup, NC_000010.11:g.102434389_102434398dup, NC_000010.11:g.102434388_102434398dup, NC_000010.11:g.102434387_102434398dup, NC_000010.11:g.102434386_102434398dup, NC_000010.11:g.102434384_102434398dup, NC_000010.11:g.102434383_102434398dup, NC_000010.11:g.102434382_102434398dup, NC_000010.11:g.102434381_102434398dup, NC_000010.11:g.102434380_102434398dup, NC_000010.11:g.102434379_102434398dup, NC_000010.10:g.104194144_104194155del, NC_000010.10:g.104194145_104194155del, NC_000010.10:g.104194146_104194155del, NC_000010.10:g.104194147_104194155del, NC_000010.10:g.104194148_104194155del, NC_000010.10:g.104194149_104194155del, NC_000010.10:g.104194150_104194155del, NC_000010.10:g.104194151_104194155del, NC_000010.10:g.104194152_104194155del, NC_000010.10:g.104194153_104194155del, NC_000010.10:g.104194154_104194155del, NC_000010.10:g.104194155del, NC_000010.10:g.104194155dup, NC_000010.10:g.104194154_104194155dup, NC_000010.10:g.104194153_104194155dup, NC_000010.10:g.104194152_104194155dup, NC_000010.10:g.104194151_104194155dup, NC_000010.10:g.104194150_104194155dup, NC_000010.10:g.104194149_104194155dup, NC_000010.10:g.104194148_104194155dup, NC_000010.10:g.104194147_104194155dup, NC_000010.10:g.104194146_104194155dup, NC_000010.10:g.104194145_104194155dup, NC_000010.10:g.104194144_104194155dup, NC_000010.10:g.104194143_104194155dup, NC_000010.10:g.104194141_104194155dup, NC_000010.10:g.104194140_104194155dup, NC_000010.10:g.104194139_104194155dup, NC_000010.10:g.104194138_104194155dup, NC_000010.10:g.104194137_104194155dup, NC_000010.10:g.104194136_104194155dup

Select item 14902126266.

rs1490212626 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:102428654 (GRCh38)
10:104188411 (GRCh37)
Canonical SPDI:: NC_000010.11:102428653:C:G
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.102428654C>G, NC_000010.10:g.104188411C>G

Select item 14896573567.

rs1489657356 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:102425878 (GRCh38)
10:104185635 (GRCh37)
Canonical SPDI:: NC_000010.11:102425877:C:G
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000546/1 (Korea1K)
HGVS:: NC_000010.11:g.102425878C>G, NC_000010.10:g.104185635C>G

Select item 14896082958.

rs1489608295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:102428153 (GRCh38)
10:104187910 (GRCh37)
Canonical SPDI:: NC_000010.11:102428152:C:A
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000043/6 (GnomAD)
HGVS:: NC_000010.11:g.102428153C>A, NC_000010.10:g.104187910C>A

Select item 14894377359.

rs1489437735 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:102429346 (GRCh38)
10:104189103 (GRCh37)
Canonical SPDI:: NC_000010.11:102429345:C:T
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.102429346C>T, NC_000010.10:g.104189103C>T

Select item 148931964710.

rs1489319647 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:102424390 (GRCh38)
10:104184147 (GRCh37)
Canonical SPDI:: NC_000010.11:102424389:G:T
Gene:: CUEDC2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
T=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.102424390G>T, NC_000010.10:g.104184147G>T, NM_024040.3:c.285C>A, NM_024040.2:c.285C>A, NP_076945.2:p.Asn95Lys

Select item 148896047811.

rs1488960478 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:102433485 (GRCh38)
10:104193242 (GRCh37)
Canonical SPDI:: NC_000010.11:102433484:T:G
Gene:: CUEDC2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.102433485T>G, NC_000010.10:g.104193242T>G

Select item 148894636612.

rs1488946366 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:102428971 (GRCh38)
10:104188728 (GRCh37)
Canonical SPDI:: NC_000010.11:102428970:G:A
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.102428971G>A, NC_000010.10:g.104188728G>A

Select item 148882885813.

rs1488828858 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 10:102432784 (GRCh38)
10:104192541 (GRCh37)
Canonical SPDI:: NC_000010.11:102432780:GAGAG:GAG
Gene:: CUEDC2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.102432782AG[1], NC_000010.10:g.104192539AG[1]

Select item 148871970414.

rs1488719704 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 10:102430335 (GRCh38)
10:104190092 (GRCh37)
Canonical SPDI:: NC_000010.11:102430334:AA:A
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.102430336del, NC_000010.10:g.104190093del

Select item 148870369215.

rs1488703692 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:102430123 (GRCh38)
10:104189880 (GRCh37)
Canonical SPDI:: NC_000010.11:102430122:C:T
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.102430123C>T, NC_000010.10:g.104189880C>T

Select item 148845892116.

rs1488458921 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:102428113 (GRCh38)
10:104187870 (GRCh37)
Canonical SPDI:: NC_000010.11:102428112:G:A,NC_000010.11:102428112:G:T
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.102428113G>A, NC_000010.11:g.102428113G>T, NC_000010.10:g.104187870G>A, NC_000010.10:g.104187870G>T

Select item 148770033317.

rs1487700333 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:102426925 (GRCh38)
10:104186682 (GRCh37)
Canonical SPDI:: NC_000010.11:102426924:A:C
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102426925A>C, NC_000010.10:g.104186682A>C

Select item 148757884418.

rs1487578844 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:102423365 (GRCh38)
10:104183122 (GRCh37)
Canonical SPDI:: NC_000010.11:102423364:G:A
Gene:: CUEDC2 (Varview), FBXL15 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102423365G>A, NC_000010.10:g.104183122G>A, NM_024040.3:c.*61C>T, NM_024040.2:c.*61C>T

Select item 148695108819.

rs1486951088 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:102422936 (GRCh38)
10:104182693 (GRCh37)
Canonical SPDI:: NC_000010.11:102422935:C:G,NC_000010.11:102422935:C:T
Gene:: CUEDC2 (Varview), FBXL15 (Varview)
Functional Consequence:: coding_sequence_variant,downstream_transcript_variant,synonymous_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000047/1 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.102422936C>G, NC_000010.11:g.102422936C>T, NC_000010.10:g.104182693C>G, NC_000010.10:g.104182693C>T, NM_024326.4:c.846C>G, NM_024326.4:c.846C>T, NM_024326.3:c.846C>G, NM_024326.3:c.846C>T, NM_001387294.1:c.846C>G, NM_001387294.1:c.846C>T

Select item 148677940420.

rs1486779404 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:102431164 (GRCh38)
10:104190921 (GRCh37)
Canonical SPDI:: NC_000010.11:102431163:G:T
Gene:: CUEDC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.102431164G>T, NC_000010.10:g.104190921G>T

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