SNP Links for Gene (Select 7862) - SNP

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Links from Gene

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Select item 14915523661.

rs1491552366 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:9741481 (GRCh38)
3:9783165 (GRCh37)
Canonical SPDI:: NC_000003.12:9741479:ACA:A
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/2 (GnomAD_exomes)
-=0.000018/2 (ExAC)
-=0.000725/9 (GoESP)
HGVS:: NC_000003.12:g.9741481_9741482del, NC_000003.11:g.9783165_9783166del, NG_052955.1:g.14753_14754del

Select item 14910030502.

rs1491003050 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:9743544 (GRCh38)
3:9785228 (GRCh37)
Canonical SPDI:: NC_000003.12:9743543:G:T
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.9743544G>T, NC_000003.11:g.9785228G>T, NG_052955.1:g.16816G>T

Select item 14907530203.

rs1490753020 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 3:9744058 (GRCh38)
3:9785742 (GRCh37)
Canonical SPDI:: NC_000003.12:9744057:C:A,NC_000003.12:9744057:C:G
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000003.12:g.9744058C>A, NC_000003.12:g.9744058C>G, NC_000003.11:g.9785742C>A, NC_000003.11:g.9785742C>G, NG_052955.1:g.17330C>A, NG_052955.1:g.17330C>G

Select item 14907426814.

rs1490742681 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14906260175.

rs1490626017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:9735659 (GRCh38)
3:9777343 (GRCh37)
Canonical SPDI:: NC_000003.12:9735658:T:A
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.9735659T>A, NC_000003.11:g.9777343T>A, NG_052955.1:g.8931T>A

Select item 14905775216.

rs1490577521 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:9736035 (GRCh38)
3:9777719 (GRCh37)
Canonical SPDI:: NC_000003.12:9736034:G:A
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00085/4 (GnomAD)
HGVS:: NC_000003.12:g.9736035G>A, NC_000003.11:g.9777719G>A, NG_052955.1:g.9307G>A

Select item 14905241947.

rs1490524194 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:9736385 (GRCh38)
3:9778069 (GRCh37)
Canonical SPDI:: NC_000003.12:9736384:T:C
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.9736385T>C, NC_000003.11:g.9778069T>C, NG_052955.1:g.9657T>C

Select item 14903382978.

rs1490338297 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:9736285 (GRCh38)
3:9777969 (GRCh37)
Canonical SPDI:: NC_000003.12:9736284:C:A
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.9736285C>A, NC_000003.11:g.9777969C>A, NG_052955.1:g.9557C>A

Select item 14896211339.

rs1489621133 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:9736860 (GRCh38)
3:9778544 (GRCh37)
Canonical SPDI:: NC_000003.12:9736859:A:G
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000003.12:g.9736860A>G, NC_000003.11:g.9778544A>G, NG_052955.1:g.10132A>G

Select item 148961148610.

rs1489611486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:9734040 (GRCh38)
3:9775724 (GRCh37)
Canonical SPDI:: NC_000003.12:9734039:G:A
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.9734040G>A, NC_000003.11:g.9775724G>A, NG_052955.1:g.7312G>A

Select item 148946986311.

rs1489469863 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:9741281 (GRCh38)
3:9782965 (GRCh37)
Canonical SPDI:: NC_000003.12:9741280:C:T
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.000005/1 (GnomAD_exomes)
T=0.00006/1 (TOMMO)
HGVS:: NC_000003.12:g.9741281C>T, NC_000003.11:g.9782965C>T, NG_052955.1:g.14553C>T

Select item 148940537812.

rs1489405378 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:9730958 (GRCh38)
3:9772642 (GRCh37)
Canonical SPDI:: NC_000003.12:9730957:T:C
Gene:: BRPF1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.9730958T>C, NC_000003.11:g.9772642T>C, NG_052955.1:g.4230T>C

Select item 148920361013.

rs1489203610 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:9732683 (GRCh38)
3:9774367 (GRCh37)
Canonical SPDI:: NC_000003.12:9732682:C:T
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.9732683C>T, NC_000003.11:g.9774367C>T, NG_052955.1:g.5955C>T, XM_047448875.1:c.-15C>T, XM_047448877.1:c.-15C>T

Select item 148887086114.

rs1488870861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:9746028 (GRCh38)
3:9787712 (GRCh37)
Canonical SPDI:: NC_000003.12:9746027:G:C
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000003.12:g.9746028G>C, NC_000003.11:g.9787712G>C, NG_012106.1:g.1085G>C, NG_052955.1:g.19300G>C

Select item 148844203115.

rs1488442031 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 3:9744944 (GRCh38)
3:9786628 (GRCh37)
Canonical SPDI:: NC_000003.12:9744943:A:G,NC_000003.12:9744943:A:T
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.9744944A>G, NC_000003.12:g.9744944A>T, NC_000003.11:g.9786628A>G, NC_000003.11:g.9786628A>T, NG_012106.1:g.1A>G, NG_012106.1:g.1A>T, NG_052955.1:g.18216A>G, NG_052955.1:g.18216A>T

Select item 148840748516.

rs1488407485 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:9730949 (GRCh38)
3:9772633 (GRCh37)
Canonical SPDI:: NC_000003.12:9730948:C:T
Gene:: BRPF1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000003.12:g.9730949C>T, NC_000003.11:g.9772633C>T, NG_052955.1:g.4221C>T

Select item 148796681617.

rs1487966816 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:9745129 (GRCh38)
3:9786813 (GRCh37)
Canonical SPDI:: NC_000003.12:9745128:T:C
Gene:: BRPF1 (Varview)
Functional Consequence:: coding_sequence_variant,non_coding_transcript_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.9745129T>C, NC_000003.11:g.9786813T>C, NG_012106.1:g.186T>C, NG_052955.1:g.18401T>C, NM_004634.3:c.3024T>C, NM_004634.2:c.3024T>C, NM_001003694.2:c.3042T>C, NM_001003694.1:c.3042T>C, NM_001319050.2:c.3021T>C, NM_001319050.1:c.3021T>C, NM_001319049.2:c.2739T>C, NM_001319049.1:c.2739T>C, NR_160918.1:n.3625T>C, NM_001410704.1:c.3039T>C, XM_011534101.2:c.3024T>C, XM_011534101.1:c.3024T>C, XM_005265449.2:c.3021T>C, XM_005265449.1:c.3021T>C, XM_005265450.2:c.3039T>C, XM_047448876.1:c.3042T>C, XM_047448880.1:c.2754T>C, XM_047448882.1:c.2736T>C, XM_047448875.1:c.3024T>C, XM_047448877.1:c.3021T>C, XM_047448878.1:c.2757T>C, XM_047448879.1:c.2754T>C, XM_047448881.1:c.2736T>C

Select item 148777832618.

rs1487778326 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:9733331 (GRCh38)
3:9775015 (GRCh37)
Canonical SPDI:: NC_000003.12:9733330:T:G
Gene:: BRPF1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.9733331T>G, NC_000003.11:g.9775015T>G, NG_052955.1:g.6603T>G, XM_047448876.1:c.-50T>G, XM_047448880.1:c.-50T>G, XM_047448882.1:c.-50T>G