SNP Links for Gene (Select 7781) - SNP

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Select item 14915648331.

rs1491564833 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 2:27256226 (GRCh38)
2:27479094 (GRCh37)
Canonical SPDI:: NC_000002.12:27256225:AT:
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000057/8 (GnomAD)
-=0.000117/31 (TOPMED)
HGVS:: NC_000002.12:g.27256226_27256227del, NC_000002.11:g.27479094_27479095del

Select item 14914872022.

rs1491487202 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 2:27256241 (GRCh38)
2:27479110 (GRCh37)
Canonical SPDI:: NC_000002.12:27256241:A:AA
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27256242dup, NC_000002.11:g.27479110dup

Select item 14914096623.

rs1491409662 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 2:27256242 (GRCh38)
2:27479110 (GRCh37)
Canonical SPDI:: NC_000002.12:27256240:TAT:T
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27256242_27256243del, NC_000002.11:g.27479110_27479111del

Select item 14909878204.

rs1490987820 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:27274717 (GRCh38)
2:27497585 (GRCh37)
Canonical SPDI:: NC_000002.12:27274716:A:G,NC_000002.12:27274716:A:T
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.27274717A>G, NC_000002.12:g.27274717A>T, NC_000002.11:g.27497585A>G, NC_000002.11:g.27497585A>T

Select item 14907497315.

rs1490749731 has merged into rs1237606332 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT [Show Flanks]
Chromosome:: 2:27266073 (GRCh38)
2:27488941 (GRCh37)
Canonical SPDI:: NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:27266060:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
Gene:: SLC30A3 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000002.12:g.27266073_27266076del, NC_000002.12:g.27266074_27266076del, NC_000002.12:g.27266075_27266076del, NC_000002.12:g.27266076del, NC_000002.12:g.27266076dup, NC_000002.12:g.27266075_27266076dup, NC_000002.12:g.27266074_27266076dup, NC_000002.11:g.27488941_27488944del, NC_000002.11:g.27488942_27488944del, NC_000002.11:g.27488943_27488944del, NC_000002.11:g.27488944del, NC_000002.11:g.27488944dup, NC_000002.11:g.27488943_27488944dup, NC_000002.11:g.27488942_27488944dup

Select item 14906934666.

rs1490693466 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:27266185 (GRCh38)
2:27489053 (GRCh37)
Canonical SPDI:: NC_000002.12:27266184:A:G
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27266185A>G, NC_000002.11:g.27489053A>G

Select item 14906003497.

rs1490600349 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:27275862 (GRCh38)
2:27498730 (GRCh37)
Canonical SPDI:: NC_000002.12:27275861:C:T
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000002.12:g.27275862C>T, NC_000002.11:g.27498730C>T

Select item 14905537938.

rs1490553793 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:27275366 (GRCh38)
2:27498234 (GRCh37)
Canonical SPDI:: NC_000002.12:27275365:C:T
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000002.12:g.27275366C>T, NC_000002.11:g.27498234C>T

Select item 14905248739.

rs1490524873 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:27275308 (GRCh38)
2:27498176 (GRCh37)
Canonical SPDI:: NC_000002.12:27275307:T:G
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.27275308T>G, NC_000002.11:g.27498176T>G, XM_005264548.4:c.-125A>C, XM_005264548.3:c.-125A>C, XM_005264548.2:c.-125A>C, XM_005264548.1:c.-125A>C, NM_001318949.2:c.-125A>C, NM_001318949.1:c.-125A>C, NM_001318951.2:c.-76A>C, NM_001318951.1:c.-76A>C, XM_017004873.2:c.-76A>C, XM_017004873.1:c.-76A>C, XM_047445787.1:c.-125A>C

Select item 149043369410.

rs1490433694 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 2:27259174 (GRCh38)
2:27482043 (GRCh37)
Canonical SPDI:: NC_000002.12:27259174:A:AA
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000084/1 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000136/36 (TOPMED)
HGVS:: NC_000002.12:g.27259175dup, NC_000002.11:g.27482043dup

Select item 149042265711.

rs1490422657 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:27262132 (GRCh38)
2:27485000 (GRCh37)
Canonical SPDI:: NC_000002.12:27262131:C:T
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.27262132C>T, NC_000002.11:g.27485000C>T

Select item 149037129712.

rs1490371297 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 2:27259490 (GRCh38)
2:27482359 (GRCh37)
Canonical SPDI:: NC_000002.12:27259490::A
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00006/1 (ALFA)
HGVS:: NC_000002.12:g.27259490_27259491insA, NC_000002.11:g.27482358_27482359insA

Select item 149020382813.

rs1490203828 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:27265581 (GRCh38)
2:27488449 (GRCh37)
Canonical SPDI:: NC_000002.12:27265580:G:A
Gene:: SLC30A3 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.27265581G>A, NC_000002.11:g.27488449G>A

Select item 149005993614.

rs1490059936 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:27274849 (GRCh38)
2:27497717 (GRCh37)
Canonical SPDI:: NC_000002.12:27274848:T:C
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27274849T>C, NC_000002.11:g.27497717T>C

Select item 149003682215.

rs1490036822 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:27257490 (GRCh38)
2:27480358 (GRCh37)
Canonical SPDI:: NC_000002.12:27257489:C:G,NC_000002.12:27257489:C:T
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000066/1 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.27257490C>G, NC_000002.12:g.27257490C>T, NC_000002.11:g.27480358C>G, NC_000002.11:g.27480358C>T

Select item 149000377716.

rs1490003777 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:27273832 (GRCh38)
2:27496700 (GRCh37)
Canonical SPDI:: NC_000002.12:27273831:G:A
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27273832G>A, NC_000002.11:g.27496700G>A

Select item 148994936217.

rs1489949362 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:27258712 (GRCh38)
2:27481580 (GRCh37)
Canonical SPDI:: NC_000002.12:27258711:G:A
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.27258712G>A, NC_000002.11:g.27481580G>A

Select item 148987994018.

rs1489879940 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:27260480 (GRCh38)
2:27483348 (GRCh37)
Canonical SPDI:: NC_000002.12:27260479:T:C
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.27260480T>C, NC_000002.11:g.27483348T>C

Select item 148964842219.

rs1489648422 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:27273716 (GRCh38)
2:27496584 (GRCh37)
Canonical SPDI:: NC_000002.12:27273715:C:T
Gene:: SLC30A3 (Varview), DNAJC5G (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.27273716C>T, NC_000002.11:g.27496584C>T

Select item 148949588820.

rs1489495888 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:27269773 (GRCh38)
2:27492641 (GRCh37)
Canonical SPDI:: NC_000002.12:27269772:G:A,NC_000002.12:27269772:G:T
Gene:: SLC30A3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.27269773G>A, NC_000002.12:g.27269773G>T, NC_000002.11:g.27492641G>A, NC_000002.11:g.27492641G>T

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