SNP Links for Gene (Select 7754) - SNP

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Select item 14915201141.

rs1491520114 has merged into rs398001053 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,T,TTT,TTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:27372870 (GRCh38)
6:27340649 (GRCh37)
Canonical SPDI:: NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:27372861:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
T=0.375/3 (KOREAN)
HGVS:: NC_000006.12:g.27372870_27372879del, NC_000006.12:g.27372871_27372879del, NC_000006.12:g.27372873_27372879del, NC_000006.12:g.27372874_27372879del, NC_000006.12:g.27372877_27372879del, NC_000006.12:g.27372878_27372879del, NC_000006.12:g.27372879del, NC_000006.12:g.27372879dup, NC_000006.12:g.27372878_27372879dup, NC_000006.12:g.27372877_27372879dup, NC_000006.12:g.27372876_27372879dup, NC_000006.12:g.27372870_27372879dup, NC_000006.11:g.27340649_27340658del, NC_000006.11:g.27340650_27340658del, NC_000006.11:g.27340652_27340658del, NC_000006.11:g.27340653_27340658del, NC_000006.11:g.27340656_27340658del, NC_000006.11:g.27340657_27340658del, NC_000006.11:g.27340658del, NC_000006.11:g.27340658dup, NC_000006.11:g.27340657_27340658dup, NC_000006.11:g.27340656_27340658dup, NC_000006.11:g.27340655_27340658dup, NC_000006.11:g.27340649_27340658dup

Select item 14907488122.

rs1490748812 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:27363298 (GRCh38)
6:27331077 (GRCh37)
Canonical SPDI:: NC_000006.12:27363297:G:C
Gene:: ZNF204P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27363298G>C, NC_000006.11:g.27331077G>C, NR_002722.2:n.1491C>G, NR_024553.1:n.371C>G

Select item 14902604523.

rs1490260452 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:27364780 (GRCh38)
6:27332559 (GRCh37)
Canonical SPDI:: NC_000006.12:27364779:A:T
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27364780A>T, NC_000006.11:g.27332559A>T

Select item 14901231354.

rs1490123135 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:27371766 (GRCh38)
6:27339545 (GRCh37)
Canonical SPDI:: NC_000006.12:27371765:T:C
Gene:: ZNF204P (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000142/2 (TOMMO)
HGVS:: NC_000006.12:g.27371766T>C, NC_000006.11:g.27339545T>C

Select item 14897052175.

rs1489705217 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AGAAGCCATTGCTTTCCCCTTGTCCAGACA
Chromosome:: no mapping
Canonical SPDI:

Select item 14893465156.

rs1489346515 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:27361727 (GRCh38)
6:27329506 (GRCh37)
Canonical SPDI:: NC_000006.12:27361726:C:T
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.27361727C>T, NC_000006.11:g.27329506C>T

Select item 14891788187.

rs1489178818 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:27375698 (GRCh38)
6:27343477 (GRCh37)
Canonical SPDI:: NC_000006.12:27375697:C:T
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27375698C>T, NC_000006.11:g.27343477C>T

Select item 14891069138.

rs1489106913 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 6:27359840 (GRCh38)
6:27327619 (GRCh37)
Canonical SPDI:: NC_000006.12:27359839:CC:C
Gene:: ZNF204P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000084/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.27359841del, NC_000006.11:g.27327620del, NR_002722.2:n.1992del, NR_024553.1:n.872del

Select item 14889744999.

rs1488974499 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCAACA>- [Show Flanks]
Chromosome:: 6:27361315 (GRCh38)
6:27329094 (GRCh37)
Canonical SPDI:: NC_000006.12:27361310:AACATTCAACA:AACA
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AACA=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.27361315_27361321del, NC_000006.11:g.27329094_27329100del

Select item 148895485210.

rs1488954852 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:27374149 (GRCh38)
6:27341928 (GRCh37)
Canonical SPDI:: NC_000006.12:27374148:C:T
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27374149C>T, NC_000006.11:g.27341928C>T

Select item 148883086811.

rs1488830868 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:27374490 (GRCh38)
6:27342269 (GRCh37)
Canonical SPDI:: NC_000006.12:27374489:C:G,NC_000006.12:27374489:C:T
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27374490C>G, NC_000006.12:g.27374490C>T, NC_000006.11:g.27342269C>G, NC_000006.11:g.27342269C>T

Select item 148872082312.

rs1488720823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:27359305 (GRCh38)
6:27327084 (GRCh37)
Canonical SPDI:: NC_000006.12:27359304:C:A,NC_000006.12:27359304:C:T
Gene:: ZNF204P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.27359305C>A, NC_000006.12:g.27359305C>T, NC_000006.11:g.27327084C>A, NC_000006.11:g.27327084C>T, NR_002722.2:n.2527G>T, NR_002722.2:n.2527G>A, NR_024553.1:n.1407G>T, NR_024553.1:n.1407G>A

Select item 148842747513.

rs1488427475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:27372954 (GRCh38)
6:27340733 (GRCh37)
Canonical SPDI:: NC_000006.12:27372953:G:C
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27372954G>C, NC_000006.11:g.27340733G>C

Select item 148839272914.

rs1488392729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:27375675 (GRCh38)
6:27343454 (GRCh37)
Canonical SPDI:: NC_000006.12:27375674:G:A,NC_000006.12:27375674:G:C
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000684/2 (KOREAN)
HGVS:: NC_000006.12:g.27375675G>A, NC_000006.12:g.27375675G>C, NC_000006.11:g.27343454G>A, NC_000006.11:g.27343454G>C

Select item 148810740515.

rs1488107405 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27375133 (GRCh38)
6:27342912 (GRCh37)
Canonical SPDI:: NC_000006.12:27375132:A:G
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27375133A>G, NC_000006.11:g.27342912A>G, XM_006715086.3:c.-192A>G, XM_006715086.2:c.-192A>G, XM_006715086.1:c.-192A>G, NM_001322288.2:c.-271A>G, NM_001322288.1:c.-271A>G

Select item 148747006716.

rs1487470067 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27376782 (GRCh38)
6:27344561 (GRCh37)
Canonical SPDI:: NC_000006.12:27376781:G:A
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27376782G>A, NC_000006.11:g.27344561G>A

Select item 148745975217.

rs1487459752 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27362023 (GRCh38)
6:27329802 (GRCh37)
Canonical SPDI:: NC_000006.12:27362022:A:G
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27362023A>G, NC_000006.11:g.27329802A>G

Select item 148745572118.

rs1487455721 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:27364297 (GRCh38)
6:27332076 (GRCh37)
Canonical SPDI:: NC_000006.12:27364296:T:C
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27364297T>C, NC_000006.11:g.27332076T>C

Select item 148719742919.

rs1487197429 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 6:27374016 (GRCh38)
6:27341795 (GRCh37)
Canonical SPDI:: NC_000006.12:27374015:AAAA:AAA
Gene:: ZNF204P (Varview), ZNF391 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27374019del, NC_000006.11:g.27341798del

Select item 148717544620.

rs1487175446 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27365177 (GRCh38)
6:27332956 (GRCh37)
Canonical SPDI:: NC_000006.12:27365176:A:G
Gene:: ZNF204P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27365177A>G, NC_000006.11:g.27332956A>G

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