SNP Links for Gene (Select 7709) - SNP

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Select item 14915857451.

rs1491585745 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTC [Show Flanks]
Chromosome:: 1:15977335 (GRCh38)
1:16303831 (GRCh37)
Canonical SPDI:: NC_000001.11:15977335::CTC
Gene:: ZBTB17 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CTC=0.0007/3 (ALFA)
HGVS:: NC_000001.11:g.15977335_15977336insCTC, NC_000001.10:g.16303830_16303831insCTC

Select item 14914293192.

rs1491429319 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:15977339 (GRCh38)
1:16303835 (GRCh37)
Canonical SPDI:: NC_000001.11:15977339::C
Gene:: ZBTB17 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00007/1 (ALFA)
C=0.00006/3 (GnomAD)
HGVS:: NC_000001.11:g.15977339_15977340insC, NC_000001.10:g.16303834_16303835insC

Select item 14913913613.

rs1491391361 has merged into rs36032253 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTT>-,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT [Show Flanks]
Chromosome:: 1:15977347 (GRCh38)
1:16303842 (GRCh37)
Canonical SPDI:: NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTT,NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:15977338:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: ZBTB17 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.15977347_15977352del, NC_000001.11:g.15977350_15977352del, NC_000001.11:g.15977351_15977352del, NC_000001.11:g.15977352del, NC_000001.11:g.15977352dup, NC_000001.11:g.15977351_15977352dup, NC_000001.10:g.16303842_16303847del, NC_000001.10:g.16303845_16303847del, NC_000001.10:g.16303846_16303847del, NC_000001.10:g.16303847del, NC_000001.10:g.16303847dup, NC_000001.10:g.16303846_16303847dup

Select item 14913703994.

rs1491370399 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:15974203 (GRCh38)
1:16300698 (GRCh37)
Canonical SPDI:: NC_000001.11:15974201:ACA:A
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.00025/34 (GnomAD)
-=0.317422/1177 (TWINSUK)
-=0.318889/1229 (ALSPAC)
HGVS:: NC_000001.11:g.15974203_15974204del, NC_000001.10:g.16300698_16300699del

Select item 14913597075.

rs1491359707 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:15974348 (GRCh38)
1:16300844 (GRCh37)
Canonical SPDI:: NC_000001.11:15974348::C
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.15974348_15974349insC, NC_000001.10:g.16300843_16300844insC

Select item 14913091736.

rs1491309173 has merged into rs71003227 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTTT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:15977632 (GRCh38)
1:16304127 (GRCh37)
Canonical SPDI:: NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:15977622:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: ZBTB17 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.15977632_15977647del, NC_000001.11:g.15977633_15977647del, NC_000001.11:g.15977635_15977647del, NC_000001.11:g.15977636_15977647del, NC_000001.11:g.15977637_15977647del, NC_000001.11:g.15977638_15977647del, NC_000001.11:g.15977639_15977647del, NC_000001.11:g.15977640_15977647del, NC_000001.11:g.15977641_15977647del, NC_000001.11:g.15977642_15977647del, NC_000001.11:g.15977643_15977647del, NC_000001.11:g.15977645_15977647del, NC_000001.11:g.15977646_15977647del, NC_000001.11:g.15977647del, NC_000001.11:g.15977647dup, NC_000001.11:g.15977646_15977647dup, NC_000001.11:g.15977645_15977647dup, NC_000001.11:g.15977644_15977647dup, NC_000001.11:g.15977643_15977647dup, NC_000001.11:g.15977642_15977647dup, NC_000001.11:g.15977641_15977647dup, NC_000001.11:g.15977640_15977647dup, NC_000001.11:g.15977639_15977647dup, NC_000001.11:g.15977638_15977647dup, NC_000001.11:g.15977637_15977647dup, NC_000001.11:g.15977636_15977647dup, NC_000001.11:g.15977635_15977647dup, NC_000001.11:g.15977634_15977647dup, NC_000001.11:g.15977633_15977647dup, NC_000001.11:g.15977627_15977647dup, NC_000001.10:g.16304127_16304142del, NC_000001.10:g.16304128_16304142del, NC_000001.10:g.16304130_16304142del, NC_000001.10:g.16304131_16304142del, NC_000001.10:g.16304132_16304142del, NC_000001.10:g.16304133_16304142del, NC_000001.10:g.16304134_16304142del, NC_000001.10:g.16304135_16304142del, NC_000001.10:g.16304136_16304142del, NC_000001.10:g.16304137_16304142del, NC_000001.10:g.16304138_16304142del, NC_000001.10:g.16304140_16304142del, NC_000001.10:g.16304141_16304142del, NC_000001.10:g.16304142del, NC_000001.10:g.16304142dup, NC_000001.10:g.16304141_16304142dup, NC_000001.10:g.16304140_16304142dup, NC_000001.10:g.16304139_16304142dup, NC_000001.10:g.16304138_16304142dup, NC_000001.10:g.16304137_16304142dup, NC_000001.10:g.16304136_16304142dup, NC_000001.10:g.16304135_16304142dup, NC_000001.10:g.16304134_16304142dup, NC_000001.10:g.16304133_16304142dup, NC_000001.10:g.16304132_16304142dup, NC_000001.10:g.16304131_16304142dup, NC_000001.10:g.16304130_16304142dup, NC_000001.10:g.16304129_16304142dup, NC_000001.10:g.16304128_16304142dup, NC_000001.10:g.16304122_16304142dup

Select item 14912877717.

rs1491287771 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTCCT [Show Flanks]
Chromosome:: 1:15977623 (GRCh38)
1:16304119 (GRCh37)
Canonical SPDI:: NC_000001.11:15977623:T:TGTCCT
Gene:: ZBTB17 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000001.11:g.15977624_15977625insGTCCT, NC_000001.10:g.16304119_16304120insGTCCT

Select item 14912537798.

rs1491253779 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 1:15971361 (GRCh38)
1:16297856 (GRCh37)
Canonical SPDI:: NC_000001.11:15971360:AA:
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.005901/70 (ALFA)
-=0.001557/26 (TOMMO)
-=0.00689/885 (GnomAD)
-=0.009681/62 (1000Genomes)
HGVS:: NC_000001.11:g.15971361_15971362del, NC_000001.10:g.16297856_16297857del

Select item 14911369019.

rs1491136901 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>-,TA,TATATA [Show Flanks]
Chromosome:: 1:15971371 (GRCh38)
1:16297866 (GRCh37)
Canonical SPDI:: NC_000001.11:15971361:ATATATATATATA:ATATATATA,NC_000001.11:15971361:ATATATATATATA:ATATATATATA,NC_000001.11:15971361:ATATATATATATA:ATATATATATATATA
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATATATA=0./0 (ALFA)
-=0.01093/20 (Korea1K)
HGVS:: NC_000001.11:g.15971363TA[4], NC_000001.11:g.15971363TA[5], NC_000001.11:g.15971363TA[7], NC_000001.10:g.16297858TA[4], NC_000001.10:g.16297858TA[5], NC_000001.10:g.16297858TA[7]

Select item 149106204910.

rs1491062049 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CACACATATA [Show Flanks]
Chromosome:: 1:15971494 (GRCh38)
1:16297990 (GRCh37)
Canonical SPDI:: NC_000001.11:15971494:ATATA:ATATACACACATATA
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.15971495_15971499AT[2]AC[3]AT[2]A[1], NC_000001.10:g.16297990_16297994AT[2]AC[3]AT[2]A[1]

Select item 149100748211.

rs1491007482 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:15941733 (GRCh38)
1:16268229 (GRCh37)
Canonical SPDI:: NC_000001.11:15941733:T:TT
Gene:: ZBTB17 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.15941734dup, NC_000001.10:g.16268229dup, NG_050663.1:g.98871dup

Select item 149098801412.

rs1490988014 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTAT>- [Show Flanks]
Chromosome:: 1:15959432 (GRCh38)
1:16285927 (GRCh37)
Canonical SPDI:: NC_000001.11:15959427:CTATCTAT:CTAT
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTATCTAT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000057/15 (TOPMED)
HGVS:: NC_000001.11:g.15959428CTAT[1], NC_000001.10:g.16285923CTAT[1], XR_007065484.1:n.7591CTAT[1], XR_007065486.1:n.7076CTAT[1]

Select item 149097321413.

rs1490973214 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:15962285 (GRCh38)
1:16288780 (GRCh37)
Canonical SPDI:: NC_000001.11:15962284:G:A
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.15962285G>A, NC_000001.10:g.16288780G>A, XR_007065484.1:n.10448G>A, XR_007065486.1:n.9933G>A

Select item 149090469414.

rs1490904694 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:15974470 (GRCh38)
1:16300965 (GRCh37)
Canonical SPDI:: NC_000001.11:15974469:G:A
Gene:: ZBTB17 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.15974470G>A, NC_000001.10:g.16300965G>A

Select item 149065219415.

rs1490652194 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:15966524 (GRCh38)
1:16293019 (GRCh37)
Canonical SPDI:: NC_000001.11:15966523:C:T
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.15966524C>T, NC_000001.10:g.16293019C>T, XR_007065484.1:n.14687C>T, XR_007065486.1:n.14172C>T

Select item 149059601316.

rs1490596013 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:15965215 (GRCh38)
1:16291710 (GRCh37)
Canonical SPDI:: NC_000001.11:15965214:T:C
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.15965215T>C, NC_000001.10:g.16291710T>C, XR_007065484.1:n.13378T>C, XR_007065486.1:n.12863T>C

Select item 149057871117.

rs1490578711 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:15949697 (GRCh38)
1:16276192 (GRCh37)
Canonical SPDI:: NC_000001.11:15949696:G:C,NC_000001.11:15949696:G:T
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.15949697G>C, NC_000001.11:g.15949697G>T, NC_000001.10:g.16276192G>C, NC_000001.10:g.16276192G>T

Select item 149049828118.

rs1490498281 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:15958314 (GRCh38)
1:16284809 (GRCh37)
Canonical SPDI:: NC_000001.11:15958313:A:G
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.15958314A>G, NC_000001.10:g.16284809A>G, XR_007065484.1:n.6477A>G, XR_007065486.1:n.5962A>G

Select item 149046715419.

rs1490467154 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:15941643 (GRCh38)
1:16268139 (GRCh37)
Canonical SPDI:: NC_000001.11:15941643:A:AA
Gene:: ZBTB17 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.15941644dup, NC_000001.10:g.16268139dup, NG_050663.1:g.98781dup

Select item 149024991020.

rs1490249910 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:15950436 (GRCh38)
1:16276931 (GRCh37)
Canonical SPDI:: NC_000001.11:15950435:G:A
Gene:: ZBTB17 (Varview), LOC124903855 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.15950436G>A, NC_000001.10:g.16276931G>A

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