SNP Links for Gene (Select 7706) - SNP

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Select item 14915805031.

rs1491580503 has merged into rs11369332 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 17:56896682 (GRCh38)
17:54974043 (GRCh37)
Canonical SPDI:: NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000017.11:56896668:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
A=0.2907/1456 (1000Genomes)
A=0.3392/192 (NorthernSweden)
HGVS:: NC_000017.11:g.56896682_56896683del, NC_000017.11:g.56896683del, NC_000017.11:g.56896683dup, NC_000017.11:g.56896682_56896683dup, NC_000017.11:g.56896681_56896683dup, NC_000017.11:g.56896675_56896683dup, NC_000017.10:g.54974043_54974044del, NC_000017.10:g.54974044del, NC_000017.10:g.54974044dup, NC_000017.10:g.54974043_54974044dup, NC_000017.10:g.54974042_54974044dup, NC_000017.10:g.54974036_54974044dup

Select item 14910763112.

rs1491076311 has merged into rs35522005 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 17:56900225 (GRCh38)
17:54977586 (GRCh37)
Canonical SPDI:: NC_000017.11:56900213:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000017.11:56900213:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000017.11:56900213:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:56900213:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.12864/477 (TWINSUK)
-=0.12974/500 (ALSPAC)
-=0.14555/579 (1000Genomes)
HGVS:: NC_000017.11:g.56900225_56900226del, NC_000017.11:g.56900226del, NC_000017.11:g.56900226dup, NC_000017.11:g.56900225_56900226dup, NC_000017.10:g.54977586_54977587del, NC_000017.10:g.54977587del, NC_000017.10:g.54977587dup, NC_000017.10:g.54977586_54977587dup

Select item 14909655203.

rs1490965520 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:56894480 (GRCh38)
17:54971841 (GRCh37)
Canonical SPDI:: NC_000017.11:56894479:C:A
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.56894480C>A, NC_000017.10:g.54971841C>A

Select item 14908638454.

rs1490863845 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:56887803 (GRCh38)
17:54965164 (GRCh37)
Canonical SPDI:: NC_000017.11:56887802:G:A
Gene:: TRIM25 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.56887803G>A, NC_000017.10:g.54965164G>A

Select item 14907486475.

rs1490748647 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:56911295 (GRCh38)
17:54988656 (GRCh37)
Canonical SPDI:: NC_000017.11:56911294:A:G
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000017.11:g.56911295A>G, NC_000017.10:g.54988656A>G

Select item 14906630186.

rs1490663018 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:56903731 (GRCh38)
17:54981092 (GRCh37)
Canonical SPDI:: NC_000017.11:56903730:A:T
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.56903731A>T, NC_000017.10:g.54981092A>T

Select item 14904712787.

rs1490471278 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:56912466 (GRCh38)
17:54989827 (GRCh37)
Canonical SPDI:: NC_000017.11:56912465:A:T
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.56912466A>T, NC_000017.10:g.54989827A>T

Select item 14903342348.

rs1490334234 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:56904748 (GRCh38)
17:54982109 (GRCh37)
Canonical SPDI:: NC_000017.11:56904747:C:T
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.56904748C>T, NC_000017.10:g.54982109C>T

Select item 14903294209.

rs1490329420 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:56903633 (GRCh38)
17:54980994 (GRCh37)
Canonical SPDI:: NC_000017.11:56903632:A:G
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.56903633A>G, NC_000017.10:g.54980994A>G

Select item 149009074510.

rs1490090745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:56896738 (GRCh38)
17:54974099 (GRCh37)
Canonical SPDI:: NC_000017.11:56896737:T:C
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.56896738T>C, NC_000017.10:g.54974099T>C

Select item 149001962411.

rs1490019624 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:56890657 (GRCh38)
17:54968018 (GRCh37)
Canonical SPDI:: NC_000017.11:56890656:T:A
Gene:: TRIM25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000017.11:g.56890657T>A, NC_000017.10:g.54968018T>A, NM_005082.5:c.*1043A>T, NM_005082.4:c.*1043A>T

Select item 148992807012.

rs1489928070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:56896345 (GRCh38)
17:54973706 (GRCh37)
Canonical SPDI:: NC_000017.11:56896344:C:A
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.56896345C>A, NC_000017.10:g.54973706C>A

Select item 148988433413.

rs1489884334 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:56913016 (GRCh38)
17:54990377 (GRCh37)
Canonical SPDI:: NC_000017.11:56913015:T:C
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.56913016T>C, NC_000017.10:g.54990377T>C

Select item 148977133414.

rs1489771334 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:56913972 (GRCh38)
17:54991333 (GRCh37)
Canonical SPDI:: NC_000017.11:56913971:G:A,NC_000017.11:56913971:G:C
Gene:: TRIM25 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
C=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.56913972G>A, NC_000017.11:g.56913972G>C, NC_000017.10:g.54991333G>A, NC_000017.10:g.54991333G>C, NM_005082.5:c.17C>T, NM_005082.5:c.17C>G, NM_005082.4:c.17C>T, NM_005082.4:c.17C>G, NP_005073.2:p.Pro6Leu, NP_005073.2:p.Pro6Arg

Select item 148964314015.

rs1489643140 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:56888334 (GRCh38)
17:54965695 (GRCh37)
Canonical SPDI:: NC_000017.11:56888333:T:A
Gene:: TRIM25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.56888334T>A, NC_000017.10:g.54965695T>A, NM_005082.5:c.*3366A>T, NM_005082.4:c.*3366A>T

Select item 148957659416.

rs1489576594 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:56900855 (GRCh38)
17:54978216 (GRCh37)
Canonical SPDI:: NC_000017.11:56900854:A:G
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.56900855A>G, NC_000017.10:g.54978216A>G

Select item 148947535717.

rs1489475357 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 17:56896326 (GRCh38)
17:54973687 (GRCh37)
Canonical SPDI:: NC_000017.11:56896325:C:A,NC_000017.11:56896325:C:G
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.56896326C>A, NC_000017.11:g.56896326C>G, NC_000017.10:g.54973687C>A, NC_000017.10:g.54973687C>G

Select item 148942035618.

rs1489420356 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:56888899 (GRCh38)
17:54966260 (GRCh37)
Canonical SPDI:: NC_000017.11:56888898:C:T
Gene:: TRIM25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.56888899C>T, NC_000017.10:g.54966260C>T, NM_005082.5:c.*2801G>A, NM_005082.4:c.*2801G>A

Select item 148923464619.

rs1489234646 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 17:56892039 (GRCh38)
17:54969400 (GRCh37)
Canonical SPDI:: NC_000017.11:56892038:C:A,NC_000017.11:56892038:C:G
Gene:: TRIM25 (Varview), MIR3614 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.56892039C>A, NC_000017.11:g.56892039C>G, NC_000017.10:g.54969400C>A, NC_000017.10:g.54969400C>G, NM_005082.5:c.1554G>T, NM_005082.5:c.1554G>C, NM_005082.4:c.1554G>T, NM_005082.4:c.1554G>C

Select item 148914382620.

rs1489143826 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAAGCATT>- [Show Flanks]
Chromosome:: 17:56908728 (GRCh38)
17:54986089 (GRCh37)
Canonical SPDI:: NC_000017.11:56908725:TTGAAGCATT:TT
Gene:: TRIM25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.56908728_56908735del, NC_000017.10:g.54986089_54986096del

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