SNP Links for Gene (Select 7551) - SNP

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Select item 14908852861.

rs1490885286 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 7:100078911 (GRCh38)
7:99676534 (GRCh37)
Canonical SPDI:: NC_000007.14:100078907:AGAGA:AGA
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100078909GA[1], NC_000007.13:g.99676532GA[1]

Select item 14908174582.

rs1490817458 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:100072787 (GRCh38)
7:99670410 (GRCh37)
Canonical SPDI:: NC_000007.14:100072786:G:A
Gene:: ZNF3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.100072787G>A, NC_000007.13:g.99670410G>A

Select item 14906794673.

rs1490679467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:100071724 (GRCh38)
7:99669347 (GRCh37)
Canonical SPDI:: NC_000007.14:100071723:T:C
Gene:: ZNF3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.100071724T>C, NC_000007.13:g.99669347T>C, NM_032924.5:c.760A>G, NM_032924.4:c.760A>G, XM_024446928.2:c.667A>G, XM_024446928.1:c.667A>G, NM_001362775.2:c.781A>G, NM_001362775.1:c.781A>G, XM_024446921.2:c.775A>G, XM_024446921.1:c.775A>G, NM_001278284.2:c.760A>G, NM_001278284.1:c.760A>G, NM_001278287.2:c.760A>G, NM_001278287.1:c.760A>G, NM_001362777.2:c.652A>G, NM_001362777.1:c.652A>G, NM_001318136.2:c.781A>G, NM_001318136.1:c.781A>G, XM_024446919.2:c.775A>G, XM_024446919.1:c.775A>G, XM_024446920.2:c.775A>G, XM_024446920.1:c.775A>G, NM_001318135.2:c.760A>G, NM_001318135.1:c.760A>G, NM_001362776.2:c.775A>G, NM_001362776.1:c.775A>G, XM_024446925.2:c.667A>G, XM_024446925.1:c.667A>G, NM_001278290.2:c.760A>G, NM_001278290.1:c.760A>G, NM_001278292.2:c.652A>G, NM_001278292.1:c.652A>G, XM_024446927.2:c.667A>G, XM_024446927.1:c.667A>G, NM_001278291.2:c.652A>G, NM_001278291.1:c.652A>G, NM_001371217.1:c.781A>G, NM_001371211.1:c.760A>G, NM_001371213.1:c.760A>G, NM_001371218.1:c.523A>G, NM_001371212.1:c.760A>G, NM_001371214.1:c.760A>G, NM_001371216.1:c.652A>G, NM_001371215.1:c.652A>G, NP_116313.3:p.Lys254Glu, XP_024302696.1:p.Lys223Glu, NP_001349704.1:p.Lys261Glu, XP_024302689.1:p.Lys259Glu, NP_001265213.1:p.Lys254Glu, NP_001265216.1:p.Lys254Glu, NP_001349706.1:p.Lys218Glu, NP_001305065.1:p.Lys261Glu, XP_024302687.1:p.Lys259Glu, XP_024302688.1:p.Lys259Glu, NP_001305064.1:p.Lys254Glu, NP_001349705.1:p.Lys259Glu, XP_024302693.1:p.Lys223Glu, NP_001265219.1:p.Lys254Glu, NP_001265221.1:p.Lys218Glu, XP_024302695.1:p.Lys223Glu, NP_001265220.1:p.Lys218Glu, NP_001358146.1:p.Lys261Glu, NP_001358140.1:p.Lys254Glu, NP_001358142.1:p.Lys254Glu, NP_001358147.1:p.Lys175Glu, NP_001358141.1:p.Lys254Glu, NP_001358143.1:p.Lys254Glu, NP_001358145.1:p.Lys218Glu, NP_001358144.1:p.Lys218Glu

Select item 14906241934.

rs1490624193 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:100066204 (GRCh38)
7:99663827 (GRCh37)
Canonical SPDI:: NC_000007.14:100066203:G:A
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.100066204G>A, NC_000007.13:g.99663827G>A, NG_078381.1:g.419G>A

Select item 14903953265.

rs1490395326 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:100079337 (GRCh38)
7:99676960 (GRCh37)
Canonical SPDI:: NC_000007.14:100079336:T:C
Gene:: ZNF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000034/9 (TOPMED)
HGVS:: NC_000007.14:g.100079337T>C, NC_000007.13:g.99676960T>C

Select item 14903713376.

rs1490371337 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:100080349 (GRCh38)
7:99677972 (GRCh37)
Canonical SPDI:: NC_000007.14:100080348:C:A
Gene:: ZNF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.100080349C>A, NC_000007.13:g.99677972C>A

Select item 14902818097.

rs1490281809 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>- [Show Flanks]
Chromosome:: 7:100077680 (GRCh38)
7:99675303 (GRCh37)
Canonical SPDI:: NC_000007.14:100077678:CCC:C
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.100077680_100077681del, NC_000007.13:g.99675303_99675304del

Select item 14898507048.

rs1489850704 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:100064769 (GRCh38)
7:99662392 (GRCh37)
Canonical SPDI:: NC_000007.14:100064768:C:T
Gene:: ZNF3 (Varview), ZSCAN21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100064769C>T, NC_000007.13:g.99662392C>T, XM_005250568.5:c.*152C>T, XM_005250568.4:c.*152C>T, XM_005250568.3:c.*152C>T, XM_005250568.2:c.*152C>T, XM_005250568.1:c.*152C>T, XM_006716113.4:c.*152C>T, XM_006716113.3:c.*152C>T, XM_006716113.2:c.*152C>T, XM_006716113.1:c.*152C>T, NM_017715.4:c.*19G>A, NM_017715.3:c.*19G>A, NM_145914.3:c.*152C>T, NM_145914.2:c.*152C>T, NM_001362779.2:c.*152C>T, NM_001362779.1:c.*152C>T, NM_001362780.2:c.*152C>T, NM_001362780.1:c.*152C>T, NM_001362781.2:c.*118C>T, NM_001362781.1:c.*118C>T, NM_001318137.2:c.*19G>A, NM_001318137.1:c.*19G>A, XM_047420806.1:c.*152C>T, XM_047420807.1:c.*118C>T, XM_047420802.1:c.*19G>A, NM_001371210.1:c.*19G>A

Select item 14897872679.

rs1489787267 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:100078102 (GRCh38)
7:99675725 (GRCh37)
Canonical SPDI:: NC_000007.14:100078101:C:T
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100078102C>T, NC_000007.13:g.99675725C>T

Select item 148974907310.

rs1489749073 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:100081742 (GRCh38)
7:99679365 (GRCh37)
Canonical SPDI:: NC_000007.14:100081741:C:T
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100081742C>T, NC_000007.13:g.99679365C>T, NM_032924.4:c.-305G>A, NM_017715.3:c.-305G>A, NM_001362775.1:c.-564G>A, NM_001362777.1:c.-487G>A, NM_001318136.1:c.-312G>A, NM_001318135.1:c.-301G>A, NM_001362776.1:c.-184G>A, NM_001278290.1:c.-184G>A, NM_001278292.1:c.-282G>A, NM_001278291.1:c.-161G>A, NM_001318137.1:c.-161G>A

Select item 148936569611.

rs1489365696 has merged into rs1195614527 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,TT,TTTT,TTTTTT [Show Flanks]
Chromosome:: 7:100069626 (GRCh38)
7:99667249 (GRCh37)
Canonical SPDI:: NC_000007.14:100069620:TTTTTTTTTT:TTTTT,NC_000007.14:100069620:TTTTTTTTTT:TTTTTTT,NC_000007.14:100069620:TTTTTTTTTT:TTTTTTTTT,NC_000007.14:100069620:TTTTTTTTTT:TTTTTTTTTTT
Gene:: ZNF3 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
T=0.000212/4 (TOMMO)
HGVS:: NC_000007.14:g.100069626_100069630del, NC_000007.14:g.100069628_100069630del, NC_000007.14:g.100069630del, NC_000007.14:g.100069630dup, NC_000007.13:g.99667249_99667253del, NC_000007.13:g.99667251_99667253del, NC_000007.13:g.99667253del, NC_000007.13:g.99667253dup

Select item 148936365512.

rs1489363655 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:100070526 (GRCh38)
7:99668149 (GRCh37)
Canonical SPDI:: NC_000007.14:100070525:C:T
Gene:: ZNF3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.100070526C>T, NC_000007.13:g.99668149C>T, NM_032924.5:c.*617G>A, NM_032924.4:c.*617G>A, XM_024446928.2:c.*617G>A, XM_024446928.1:c.*617G>A, NM_001362775.2:c.*617G>A, NM_001362775.1:c.*617G>A, XM_024446921.2:c.*617G>A, XM_024446921.1:c.*617G>A, NM_001278284.2:c.*617G>A, NM_001278284.1:c.*617G>A, NM_001278287.2:c.*617G>A, NM_001278287.1:c.*617G>A, NM_001362777.2:c.*617G>A, NM_001362777.1:c.*617G>A, NM_001318136.2:c.*617G>A, NM_001318136.1:c.*617G>A, XM_024446919.2:c.*617G>A, XM_024446919.1:c.*617G>A, XM_024446920.2:c.*617G>A, XM_024446920.1:c.*617G>A, NM_001318135.2:c.*617G>A, NM_001318135.1:c.*617G>A, NM_001362776.2:c.*617G>A, NM_001362776.1:c.*617G>A, XM_024446925.2:c.*617G>A, XM_024446925.1:c.*617G>A, NM_001278290.2:c.*617G>A, NM_001278290.1:c.*617G>A, NM_001278292.2:c.*617G>A, NM_001278292.1:c.*617G>A, XM_024446927.2:c.*617G>A, XM_024446927.1:c.*617G>A, NM_001278291.2:c.*617G>A, NM_001278291.1:c.*617G>A, NM_001371217.1:c.*617G>A, NM_001371211.1:c.*617G>A, NM_001371213.1:c.*617G>A, NM_001371218.1:c.*617G>A, NM_001371212.1:c.*617G>A, NM_001371214.1:c.*617G>A, NM_001371216.1:c.*617G>A, NM_001371215.1:c.*617G>A

Select item 148934382513.

rs1489343825 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:100070339 (GRCh38)
7:99667962 (GRCh37)
Canonical SPDI:: NC_000007.14:100070338:A:G
Gene:: ZNF3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.100070339A>G, NC_000007.13:g.99667962A>G, NM_032924.5:c.*804T>C, NM_032924.4:c.*804T>C, XM_024446928.2:c.*804T>C, XM_024446928.1:c.*804T>C, NM_001362775.2:c.*804T>C, NM_001362775.1:c.*804T>C, XM_024446921.2:c.*804T>C, XM_024446921.1:c.*804T>C, NM_001278284.2:c.*804T>C, NM_001278284.1:c.*804T>C, NM_001278287.2:c.*804T>C, NM_001278287.1:c.*804T>C, NM_001362777.2:c.*804T>C, NM_001362777.1:c.*804T>C, NM_001318136.2:c.*804T>C, NM_001318136.1:c.*804T>C, XM_024446919.2:c.*804T>C, XM_024446919.1:c.*804T>C, XM_024446920.2:c.*804T>C, XM_024446920.1:c.*804T>C, NM_001318135.2:c.*804T>C, NM_001318135.1:c.*804T>C, NM_001362776.2:c.*804T>C, NM_001362776.1:c.*804T>C, XM_024446925.2:c.*804T>C, XM_024446925.1:c.*804T>C, NM_001278290.2:c.*804T>C, NM_001278290.1:c.*804T>C, NM_001278292.2:c.*804T>C, NM_001278292.1:c.*804T>C, XM_024446927.2:c.*804T>C, XM_024446927.1:c.*804T>C, NM_001278291.2:c.*804T>C, NM_001278291.1:c.*804T>C, NM_001371217.1:c.*804T>C, NM_001371211.1:c.*804T>C, NM_001371213.1:c.*804T>C, NM_001371218.1:c.*804T>C, NM_001371212.1:c.*804T>C, NM_001371214.1:c.*804T>C, NM_001371216.1:c.*804T>C, NM_001371215.1:c.*804T>C

Select item 148927391614.

rs1489273916 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:100070638 (GRCh38)
7:99668261 (GRCh37)
Canonical SPDI:: NC_000007.14:100070637:T:C
Gene:: ZNF3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100070638T>C, NC_000007.13:g.99668261T>C, NM_032924.5:c.*505A>G, NM_032924.4:c.*505A>G, XM_024446928.2:c.*505A>G, XM_024446928.1:c.*505A>G, NM_001362775.2:c.*505A>G, NM_001362775.1:c.*505A>G, XM_024446921.2:c.*505A>G, XM_024446921.1:c.*505A>G, NM_001278284.2:c.*505A>G, NM_001278284.1:c.*505A>G, NM_001278287.2:c.*505A>G, NM_001278287.1:c.*505A>G, NM_001362777.2:c.*505A>G, NM_001362777.1:c.*505A>G, NM_001318136.2:c.*505A>G, NM_001318136.1:c.*505A>G, XM_024446919.2:c.*505A>G, XM_024446919.1:c.*505A>G, XM_024446920.2:c.*505A>G, XM_024446920.1:c.*505A>G, NM_001318135.2:c.*505A>G, NM_001318135.1:c.*505A>G, NM_001362776.2:c.*505A>G, NM_001362776.1:c.*505A>G, XM_024446925.2:c.*505A>G, XM_024446925.1:c.*505A>G, NM_001278290.2:c.*505A>G, NM_001278290.1:c.*505A>G, NM_001278292.2:c.*505A>G, NM_001278292.1:c.*505A>G, XM_024446927.2:c.*505A>G, XM_024446927.1:c.*505A>G, NM_001278291.2:c.*505A>G, NM_001278291.1:c.*505A>G, NM_001371217.1:c.*505A>G, NM_001371211.1:c.*505A>G, NM_001371213.1:c.*505A>G, NM_001371218.1:c.*505A>G, NM_001371212.1:c.*505A>G, NM_001371214.1:c.*505A>G, NM_001371216.1:c.*505A>G, NM_001371215.1:c.*505A>G

Select item 148927095915.

rs1489270959 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:100063902 (GRCh38)
7:99661525 (GRCh37)
Canonical SPDI:: NC_000007.14:100063901:G:A
Gene:: ZNF3 (Varview), ZSCAN21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.100063902G>A, NC_000007.13:g.99661525G>A, XM_005250568.5:c.707G>A, XM_005250568.4:c.707G>A, XM_005250568.3:c.707G>A, XM_005250568.2:c.707G>A, XM_005250568.1:c.707G>A, XM_006716113.4:c.707G>A, XM_006716113.3:c.707G>A, XM_006716113.2:c.707G>A, XM_006716113.1:c.707G>A, NM_017715.4:c.*886C>T, NM_017715.3:c.*886C>T, NM_145914.3:c.707G>A, NM_145914.2:c.707G>A, NM_001362779.2:c.707G>A, NM_001362779.1:c.707G>A, NM_001362780.2:c.707G>A, NM_001362780.1:c.707G>A, NM_001362781.2:c.707G>A, NM_001362781.1:c.707G>A, NM_001318137.2:c.*886C>T, NM_001318137.1:c.*886C>T, XM_047420806.1:c.707G>A, XM_047420807.1:c.707G>A, XM_047420802.1:c.*886C>T, XP_005250625.1:p.Ser236Asn, XP_006716176.1:p.Ser236Asn, NP_666019.1:p.Ser236Asn, NP_001349708.1:p.Ser236Asn, NP_001349709.1:p.Ser236Asn, NP_001349710.1:p.Ser236Asn, XP_047276762.1:p.Ser236Asn, XP_047276763.1:p.Ser236Asn

Select item 148916384916.

rs1489163849 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:100078197 (GRCh38)
7:99675820 (GRCh37)
Canonical SPDI:: NC_000007.14:100078196:A:G
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.100078197A>G, NC_000007.13:g.99675820A>G

Select item 148913221417.

rs1489132214 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:100077585 (GRCh38)
7:99675208 (GRCh37)
Canonical SPDI:: NC_000007.14:100077584:T:A
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.100077585T>A, NC_000007.13:g.99675208T>A

Select item 148913177118.

rs1489131771 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:100077194 (GRCh38)
7:99674817 (GRCh37)
Canonical SPDI:: NC_000007.14:100077193:T:C
Gene:: ZNF3 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.100077194T>C, NC_000007.13:g.99674817T>C, XM_024446928.2:c.-970A>G

Select item 148900133319.

rs1489001333 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 7:100078504 (GRCh38)
7:99676128 (GRCh37)
Canonical SPDI:: NC_000007.14:100078504::T
Gene:: ZNF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.100078504_100078505insT, NC_000007.13:g.99676127_99676128insT

Select item 148892611520.

rs1488926115 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:100074702 (GRCh38)
7:99672325 (GRCh37)
Canonical SPDI:: NC_000007.14:100074701:T:A
Gene:: ZNF3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.100074702T>A, NC_000007.13:g.99672325T>A

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