SNP Links for Gene (Select 7535) - SNP

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Select item 14913329981.

rs1491332998 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 2:97730690 (GRCh38)
2:98347153 (GRCh37)
Canonical SPDI:: NC_000002.12:97730688:TGT:T
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
-=0.000064/9 (GnomAD)
-=0.000204/54 (TOPMED)
-=0.000599/3 (1000Genomes)
HGVS:: NC_000002.12:g.97730690_97730691del, NC_000002.11:g.98347153_98347154del, NG_007727.1:g.22123_22124del, NW_025791765.1:g.656721_656722del

Select item 14910253412.

rs1491025341 has merged into rs534883145 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C,CCC [Show Flanks]
Chromosome:: 2:97740185 (GRCh38)
2:98356648 (GRCh37)
Canonical SPDI:: NC_000002.12:97740179:CCCCCCC:CCCCC,NC_000002.12:97740179:CCCCCCC:CCCCCC,NC_000002.12:97740179:CCCCCCC:CCCCCCCC
Gene:: ZAP70 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCC=0./0 (ALFA)
-=0.001998/10 (1000Genomes)
-=0.002335/9 (ALSPAC)
-=0.002427/9 (TWINSUK)
-=0.002679/12 (Estonian)
-=0.003006/3 (GoNL)
-=0.003453/914 (TOPMED)
HGVS:: NC_000002.12:g.97740185_97740186del, NC_000002.12:g.97740186del, NC_000002.12:g.97740186dup, NC_000002.11:g.98356648_98356649del, NC_000002.11:g.98356649del, NC_000002.11:g.98356649dup, NG_007727.1:g.31618_31619del, NG_007727.1:g.31619del, NG_007727.1:g.31619dup, NW_025791765.1:g.666216_666217del, NW_025791765.1:g.666217del, NW_025791765.1:g.666217dup

Select item 14909176503.

rs1490917650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:97731354 (GRCh38)
2:98347817 (GRCh37)
Canonical SPDI:: NC_000002.12:97731353:G:A
Gene:: ZAP70 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.97731354G>A, NC_000002.11:g.98347817G>A, NG_007727.1:g.22787G>A, NW_025791765.1:g.657385G>A

Select item 14908259964.

rs1490825996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:97723287 (GRCh38)
2:98339750 (GRCh37)
Canonical SPDI:: NC_000002.12:97723286:G:A
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.97723287G>A, NC_000002.11:g.98339750G>A, NG_007727.1:g.14720G>A, NW_025791765.1:g.649318G>A

Select item 14906162945.

rs1490616294 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:97738833 (GRCh38)
2:98355296 (GRCh37)
Canonical SPDI:: NC_000002.12:97738832:C:A,NC_000002.12:97738832:C:T
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.97738833C>A, NC_000002.12:g.97738833C>T, NC_000002.11:g.98355296C>A, NC_000002.11:g.98355296C>T, NG_007727.1:g.30266C>A, NG_007727.1:g.30266C>T, NW_025791765.1:g.664864C>A, NW_025791765.1:g.664864C>T

Select item 14906013146.

rs1490601314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:97737793 (GRCh38)
2:98354256 (GRCh37)
Canonical SPDI:: NC_000002.12:97737792:G:A
Gene:: ZAP70 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.97737793G>A, NC_000002.11:g.98354256G>A, NG_007727.1:g.29226G>A, NM_001079.4:c.1519G>A, NM_001079.3:c.1519G>A, NM_207519.2:c.598G>A, NM_207519.1:c.598G>A, NM_001378594.1:c.1519G>A, NW_025791765.1:g.663824G>A, XM_047445775.1:c.1519G>A, XM_047445776.1:c.1501G>A, XR_007081582.1:n.1718G>A, XR_007081583.1:n.1718G>A, XM_047445774.1:c.1501G>A, NP_001070.2:p.Ala507Thr, NP_997402.1:p.Ala200Thr, NP_001365523.1:p.Ala507Thr, XP_047301731.1:p.Ala507Thr, XP_047301732.1:p.Ala501Thr, XP_047301730.1:p.Ala501Thr

Select item 14905274587.

rs1490527458 has merged into rs1462513008 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT [Show Flanks]
Chromosome:: 2:97721795 (GRCh38)
2:98338258 (GRCh37)
Canonical SPDI:: NC_000002.12:97721785:TTTTTTTTTTTT:TTTTTTTTT,NC_000002.12:97721785:TTTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:97721785:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:97721785:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:97721785:TTTTTTTTTTTT:TTTTTTTTTTTTTT
Gene:: ZAP70 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000002.12:g.97721795_97721797del, NC_000002.12:g.97721796_97721797del, NC_000002.12:g.97721797del, NC_000002.12:g.97721797dup, NC_000002.12:g.97721796_97721797dup, NC_000002.11:g.98338258_98338260del, NC_000002.11:g.98338259_98338260del, NC_000002.11:g.98338260del, NC_000002.11:g.98338260dup, NC_000002.11:g.98338259_98338260dup, NG_007727.1:g.13228_13230del, NG_007727.1:g.13229_13230del, NG_007727.1:g.13230del, NG_007727.1:g.13230dup, NG_007727.1:g.13229_13230dup, NW_025791765.1:g.647826_647828del, NW_025791765.1:g.647827_647828del, NW_025791765.1:g.647828del, NW_025791765.1:g.647828dup, NW_025791765.1:g.647827_647828dup

Select item 14904546138.

rs1490454613 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:97716488 (GRCh38)
2:98332951 (GRCh37)
Canonical SPDI:: NC_000002.12:97716487:G:C
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.97716488G>C, NC_000002.11:g.98332951G>C, NG_007727.1:g.7921G>C, NW_025791765.1:g.642519G>C

Select item 14904470979.

rs1490447097 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:97712929 (GRCh38)
2:98329392 (GRCh37)
Canonical SPDI:: NC_000002.12:97712928:C:G,NC_000002.12:97712928:C:T
Gene:: ZAP70 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.97712929C>G, NC_000002.12:g.97712929C>T, NC_000002.11:g.98329392C>G, NC_000002.11:g.98329392C>T, NG_007727.1:g.4362C>G, NG_007727.1:g.4362C>T, NW_025791765.1:g.638960C>G, NW_025791765.1:g.638960C>T

Select item 149027058910.

rs1490270589 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:97714856 (GRCh38)
2:98331319 (GRCh37)
Canonical SPDI:: NC_000002.12:97714855:T:G
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.97714856T>G, NC_000002.11:g.98331319T>G, NG_007727.1:g.6289T>G, NW_025791765.1:g.640887T>G

Select item 149020885511.

rs1490208855 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:97734538 (GRCh38)
2:98351001 (GRCh37)
Canonical SPDI:: NC_000002.12:97734537:A:G
Gene:: ZAP70 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,5_prime_UTR_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000002.12:g.97734538A>G, NC_000002.11:g.98351001A>G, NG_007727.1:g.25971A>G, NM_001079.4:c.908A>G, NM_001079.3:c.908A>G, NM_207519.2:c.-14A>G, NM_207519.1:c.-14A>G, NM_001378594.1:c.908A>G, NW_025791765.1:g.660569A>G, XM_047445775.1:c.908A>G, XM_047445776.1:c.890A>G, XR_007081582.1:n.1107A>G, XR_007081583.1:n.1107A>G, XM_047445774.1:c.890A>G, NP_001070.2:p.Asp303Gly, NP_001365523.1:p.Asp303Gly, XP_047301731.1:p.Asp303Gly, XP_047301732.1:p.Asp297Gly, XP_047301730.1:p.Asp297Gly

Select item 149000555112.

rs1490005551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:97711778 (GRCh38)
2:98328241 (GRCh37)
Canonical SPDI:: NC_000002.12:97711777:C:A,NC_000002.12:97711777:C:T
Gene:: ZAP70 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000132/2 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000002.12:g.97711778C>A, NC_000002.12:g.97711778C>T, NC_000002.11:g.98328241C>A, NC_000002.11:g.98328241C>T, NG_007727.1:g.3211C>A, NG_007727.1:g.3211C>T, NW_025791765.1:g.637809C>A, NW_025791765.1:g.637809C>T

Select item 148995430413.

rs1489954304 [Homo sapiens]

Variant type:: DEL
Alleles:: TTGGCATTGGGACCAGAGACCCCGCAAGT>- [Show Flanks]
Chromosome:: 2:97713929 (GRCh38)
2:98330392 (GRCh37)
Canonical SPDI:: NC_000002.12:97713928:TTGGCATTGGGACCAGAGACCCCGCAAGT:
Gene:: ZAP70 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.97713929_97713957del, NC_000002.11:g.98330392_98330420del, NG_007727.1:g.5362_5390del, NM_001079.4:c.-87_-59del, NM_001079.3:c.-87_-59del, NM_001378594.1:c.-87_-59del, NW_025791765.1:g.639960_639988del, XM_047445775.1:c.-87_-59del, XM_047445776.1:c.-87_-59del, XR_007081582.1:n.113_141del, XR_007081583.1:n.113_141del, XM_047445774.1:c.-87_-59del

Select item 148993957014.

rs1489939570 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:97730467 (GRCh38)
2:98346930 (GRCh37)
Canonical SPDI:: NC_000002.12:97730466:C:G,NC_000002.12:97730466:C:T
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.97730467C>G, NC_000002.12:g.97730467C>T, NC_000002.11:g.98346930C>G, NC_000002.11:g.98346930C>T, NG_007727.1:g.21900C>G, NG_007727.1:g.21900C>T, NW_025791765.1:g.656498C>G, NW_025791765.1:g.656498C>T

Select item 148990358615.

rs1489903586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:97729232 (GRCh38)
2:98345695 (GRCh37)
Canonical SPDI:: NC_000002.12:97729231:G:C
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000072/19 (TOPMED)
HGVS:: NC_000002.12:g.97729232G>C, NC_000002.11:g.98345695G>C, NG_007727.1:g.20665G>C, NW_025791765.1:g.655263G>C

Select item 148964076716.

rs1489640767 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:97735265 (GRCh38)
2:98351728 (GRCh37)
Canonical SPDI:: NC_000002.12:97735264:G:A
Gene:: ZAP70 (Varview)
Functional Consequence:: non_coding_transcript_variant,synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000002.12:g.97735265G>A, NC_000002.11:g.98351728G>A, NG_007727.1:g.26698G>A, NM_001079.4:c.1098G>A, NM_001079.3:c.1098G>A, NM_207519.2:c.177G>A, NM_207519.1:c.177G>A, NM_001378594.1:c.1098G>A, NW_025791765.1:g.661296G>A, XM_047445775.1:c.1098G>A, XM_047445776.1:c.1080G>A, XR_007081582.1:n.1297G>A, XR_007081583.1:n.1297G>A, XM_047445774.1:c.1080G>A

Select item 148962426017.

rs1489624260 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 2:97721580 (GRCh38)
2:98338043 (GRCh37)
Canonical SPDI:: NC_000002.12:97721579:A:
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000002.12:g.97721580del, NC_000002.11:g.98338043del, NG_007727.1:g.13013del, NW_025791765.1:g.647611del

Select item 148955974518.

rs1489559745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:97721791 (GRCh38)
2:98338254 (GRCh37)
Canonical SPDI:: NC_000002.12:97721790:T:C,NC_000002.12:97721790:T:G
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.97721791T>C, NC_000002.12:g.97721791T>G, NC_000002.11:g.98338254T>C, NC_000002.11:g.98338254T>G, NG_007727.1:g.13224T>C, NG_007727.1:g.13224T>G, NW_025791765.1:g.647822T>C, NW_025791765.1:g.647822T>G

Select item 148944503219.

rs1489445032 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:97736880 (GRCh38)
2:98353343 (GRCh37)
Canonical SPDI:: NC_000002.12:97736879:G:A,NC_000002.12:97736879:G:C
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.97736880G>A, NC_000002.12:g.97736880G>C, NC_000002.11:g.98353343G>A, NC_000002.11:g.98353343G>C, NG_007727.1:g.28313G>A, NG_007727.1:g.28313G>C, NW_025791765.1:g.662911G>A, NW_025791765.1:g.662911G>C

Select item 148904491520.

rs1489044915 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:97724856 (GRCh38)
2:98341319 (GRCh37)
Canonical SPDI:: NC_000002.12:97724855:T:C
Gene:: ZAP70 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.97724856T>C, NC_000002.11:g.98341319T>C, NG_007727.1:g.16289T>C, NW_025791765.1:g.650887T>C

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