SNP Links for Gene (Select 7425) - SNP

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Select item 14911141101.

rs1491114110 has merged into rs59001268 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 7:101168019 (GRCh38)
7:100811300 (GRCh37)
Canonical SPDI:: NC_000007.14:101168017:TGT:T,NC_000007.14:101168017:TGT:TGTGT
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
-=0.0195/11 (NorthernSweden)
-=0.11326/11316 (GnomAD)
-=0.38464/5943 (TOMMO)
HGVS:: NC_000007.14:g.101168019_101168020del, NC_000007.14:g.101168019_101168020dup, NC_000007.13:g.100811300_100811301del, NC_000007.13:g.100811300_100811301dup

Select item 14909603472.

rs1490960347 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:101170362 (GRCh38)
7:100813643 (GRCh37)
Canonical SPDI:: NC_000007.14:101170361:C:A,NC_000007.14:101170361:C:T
Gene:: VGF (Varview), NAT16 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101170362C>A, NC_000007.14:g.101170362C>T, NC_000007.13:g.100813643C>A, NC_000007.13:g.100813643C>T

Select item 14907351253.

rs1490735125 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:101162916 (GRCh38)
7:100806197 (GRCh37)
Canonical SPDI:: NC_000007.14:101162915:A:G
Gene:: VGF (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00034/4 (ALFA)
G=0.00011/2 (TOMMO)
G=0.03322/96 (KOREAN)
HGVS:: NC_000007.14:g.101162916A>G, NC_000007.13:g.100806197A>G, NG_033082.2:g.13519A>G, XM_005250561.6:c.*80T>C, XM_005250561.5:c.*80T>C, XM_005250561.4:c.*80T>C, XM_005250561.3:c.*80T>C, XM_005250561.2:c.*80T>C, NM_003378.4:c.*80T>C, NM_003378.3:c.*80T>C, XM_011516549.4:c.*80T>C, XM_011516549.3:c.*80T>C, XM_011516549.2:c.*80T>C, XM_011516549.1:c.*80T>C

Select item 14905698884.

rs1490569888 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:101162406 (GRCh38)
7:100805687 (GRCh37)
Canonical SPDI:: NC_000007.14:101162405:C:T
Gene:: VGF (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.101162406C>T, NC_000007.13:g.100805687C>T, NG_033082.2:g.13009C>T

Select item 14905143145.

rs1490514314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:101163283 (GRCh38)
7:100806564 (GRCh37)
Canonical SPDI:: NC_000007.14:101163282:G:A
Gene:: VGF (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.101163283G>A, NC_000007.13:g.100806564G>A, XM_005250561.6:c.1561C>T, XM_005250561.5:c.1561C>T, XM_005250561.4:c.1561C>T, XM_005250561.3:c.1561C>T, XM_005250561.2:c.1561C>T, XM_005250561.1:c.1561C>T, NM_003378.4:c.1561C>T, NM_003378.3:c.1561C>T, XM_011516549.4:c.1561C>T, XM_011516549.3:c.1561C>T, XM_011516549.2:c.1561C>T, XM_011516549.1:c.1561C>T, XP_005250618.1:p.Pro521Ser, NP_003369.2:p.Pro521Ser, XP_011514851.1:p.Pro521Ser

Select item 14904959826.

rs1490495982 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:101162139 (GRCh38)
7:100805420 (GRCh37)
Canonical SPDI:: NC_000007.14:101162138:A:T
Gene:: VGF (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101162139A>T, NC_000007.13:g.100805420A>T, NG_033082.2:g.12742A>T

Select item 14898480157.

rs1489848015 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:101169798 (GRCh38)
7:100813079 (GRCh37)
Canonical SPDI:: NC_000007.14:101169797:G:C
Gene:: VGF (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101169798G>C, NC_000007.13:g.100813079G>C

Select item 14897163488.

rs1489716348 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:101168274 (GRCh38)
7:100811555 (GRCh37)
Canonical SPDI:: NC_000007.14:101168273:G:A
Gene:: VGF (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101168274G>A, NC_000007.13:g.100811555G>A

Select item 14896051489.

rs1489605148 has merged into rs376663461 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT,CTCTCT [Show Flanks]
Chromosome:: 7:101171379 (GRCh38)
7:100814660 (GRCh37)
Canonical SPDI:: NC_000007.14:101171368:CTCTCTCTCTCTCT:CTCTCTCTCT,NC_000007.14:101171368:CTCTCTCTCTCTCT:CTCTCTCTCTCT,NC_000007.14:101171368:CTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT
Gene:: VGF (Varview), NAT16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCTCTCTCTCT=0./0 (ALFA)
CT=0.00016/1 (1000Genomes)
HGVS:: NC_000007.14:g.101171369CT[5], NC_000007.14:g.101171369CT[6], NC_000007.14:g.101171369CT[8], NC_000007.13:g.100814650CT[5], NC_000007.13:g.100814650CT[6], NC_000007.13:g.100814650CT[8], NM_198571.3:c.*697AG[5], NM_198571.3:c.*697AG[6], NM_198571.3:c.*697AG[8], NM_198571.2:c.*697AG[5], NM_198571.2:c.*697AG[6], NM_198571.2:c.*697AG[8], NM_001369694.1:c.*697AG[5], NM_001369694.1:c.*697AG[6], NM_001369694.1:c.*697AG[8], NM_001369695.1:c.*697AG[5], NM_001369695.1:c.*697AG[6], NM_001369695.1:c.*697AG[8]

Select item 148896374110.

rs1488963741 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:101163709 (GRCh38)
7:100806990 (GRCh37)
Canonical SPDI:: NC_000007.14:101163708:C:G,NC_000007.14:101163708:C:T
Gene:: VGF (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000166/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.101163709C>G, NC_000007.14:g.101163709C>T, NC_000007.13:g.100806990C>G, NC_000007.13:g.100806990C>T, XM_005250561.6:c.1135G>C, XM_005250561.6:c.1135G>A, XM_005250561.5:c.1135G>C, XM_005250561.5:c.1135G>A, XM_005250561.4:c.1135G>C, XM_005250561.4:c.1135G>A, XM_005250561.3:c.1135G>C, XM_005250561.3:c.1135G>A, XM_005250561.2:c.1135G>C, XM_005250561.2:c.1135G>A, XM_005250561.1:c.1135G>C, XM_005250561.1:c.1135G>A, NM_003378.4:c.1135G>C, NM_003378.4:c.1135G>A, NM_003378.3:c.1135G>C, NM_003378.3:c.1135G>A, XM_011516549.4:c.1135G>C, XM_011516549.4:c.1135G>A, XM_011516549.3:c.1135G>C, XM_011516549.3:c.1135G>A, XM_011516549.2:c.1135G>C, XM_011516549.2:c.1135G>A, XM_011516549.1:c.1135G>C, XM_011516549.1:c.1135G>A, XP_005250618.1:p.Gly379Arg, XP_005250618.1:p.Gly379Arg, NP_003369.2:p.Gly379Arg, NP_003369.2:p.Gly379Arg, XP_011514851.1:p.Gly379Arg, XP_011514851.1:p.Gly379Arg

Select item 148878510211.

rs1488785102 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:101167504 (GRCh38)
7:100810785 (GRCh37)
Canonical SPDI:: NC_000007.14:101167503:G:C
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.101167504G>C, NC_000007.13:g.100810785G>C

Select item 148855272112.

rs1488552721 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:101167110 (GRCh38)
7:100810391 (GRCh37)
Canonical SPDI:: NC_000007.14:101167109:C:T
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101167110C>T, NC_000007.13:g.100810391C>T

Select item 148815502113.

rs1488155021 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:101165836 (GRCh38)
7:100809117 (GRCh37)
Canonical SPDI:: NC_000007.14:101165835:G:A,NC_000007.14:101165835:G:C
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.101165836G>A, NC_000007.14:g.101165836G>C, NC_000007.13:g.100809117G>A, NC_000007.13:g.100809117G>C

Select item 148808272014.

rs1488082720 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:101164875 (GRCh38)
7:100808156 (GRCh37)
Canonical SPDI:: NC_000007.14:101164874:A:G
Gene:: VGF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.101164875A>G, NC_000007.13:g.100808156A>G

Select item 148787245415.

rs1487872454 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:101169821 (GRCh38)
7:100813102 (GRCh37)
Canonical SPDI:: NC_000007.14:101169820:A:G
Gene:: VGF (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.101169821A>G, NC_000007.13:g.100813102A>G

Select item 148772148416.

rs1487721484 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:101162993 (GRCh38)
7:100806274 (GRCh37)
Canonical SPDI:: NC_000007.14:101162992:C:T
Gene:: VGF (Varview)
Functional Consequence:: 3_prime_UTR_variant
HGVS:: NC_000007.14:g.101162993C>T, NC_000007.13:g.100806274C>T, NG_033082.2:g.13596C>T, XM_005250561.6:c.*3G>A, XM_005250561.5:c.*3G>A, XM_005250561.4:c.*3G>A, XM_005250561.3:c.*3G>A, XM_005250561.2:c.*3G>A, XM_005250561.1:c.*3G>A, NM_003378.4:c.*3G>A, NM_003378.3:c.*3G>A, XM_011516549.4:c.*3G>A, XM_011516549.3:c.*3G>A, XM_011516549.2:c.*3G>A, XM_011516549.1:c.*3G>A

Select item 148702707417.

rs1487027074 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:101164576 (GRCh38)
7:100807857 (GRCh37)
Canonical SPDI:: NC_000007.14:101164575:G:A
Gene:: VGF (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000007.14:g.101164576G>A, NC_000007.13:g.100807857G>A, XM_005250561.6:c.268C>T, XM_005250561.5:c.268C>T, XM_005250561.4:c.268C>T, XM_005250561.3:c.268C>T, XM_005250561.2:c.268C>T, XM_005250561.1:c.268C>T, NM_003378.4:c.268C>T, NM_003378.3:c.268C>T, XM_011516549.4:c.268C>T, XM_011516549.3:c.268C>T, XM_011516549.2:c.268C>T, XM_011516549.1:c.268C>T, XP_005250618.1:p.Leu90Phe, NP_003369.2:p.Leu90Phe, XP_011514851.1:p.Leu90Phe

Select item 148687983418.

rs1486879834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:101171240 (GRCh38)
7:100814521 (GRCh37)
Canonical SPDI:: NC_000007.14:101171239:G:A
Gene:: VGF (Varview), NAT16 (Varview)
Functional Consequence:: 3_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000342/1 (KOREAN)
A=0.000779/13 (TOMMO)
HGVS:: NC_000007.14:g.101171240G>A, NC_000007.13:g.100814521G>A, NM_198571.3:c.*839C>T, NM_198571.2:c.*839C>T, NM_001369694.1:c.*839C>T, NM_001369695.1:c.*839C>T

Select item 148682412619.

rs1486824126 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:101169881 (GRCh38)
7:100813162 (GRCh37)
Canonical SPDI:: NC_000007.14:101169880:A:G
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.101169881A>G, NC_000007.13:g.100813162A>G

Select item 148681533120.

rs1486815331 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:101165758 (GRCh38)
7:100809039 (GRCh37)
Canonical SPDI:: NC_000007.14:101165757:A:T
Gene:: VGF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.101165758A>T, NC_000007.13:g.100809039A>T

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