SNP Links for Gene (Select 729862) - SNP

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Links from Gene

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Select item 14908647931.

rs1490864793 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 5:28926257 (GRCh38)
5:28926364 (GRCh37)
Canonical SPDI:: NC_000005.10:28926256:T:C,NC_000005.10:28926256:T:G
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000005.10:g.28926257T>C, NC_000005.10:g.28926257T>G, NC_000005.9:g.28926364T>C, NC_000005.9:g.28926364T>G, XM_047418005.1:c.*1248A>G, XM_047418005.1:c.*1248A>C

Select item 14891838822.

rs1489183882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:28926939 (GRCh38)
5:28927046 (GRCh37)
Canonical SPDI:: NC_000005.10:28926938:C:G,NC_000005.10:28926938:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28926939C>G, NC_000005.10:g.28926939C>T, NC_000005.9:g.28927046C>G, NC_000005.9:g.28927046C>T, XM_047418005.1:c.*566G>C, XM_047418005.1:c.*566G>A, NR_033961.1:n.70C>G, NR_033961.1:n.70C>T

Select item 14884029243.

rs1488402924 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28927400 (GRCh38)
5:28927507 (GRCh37)
Canonical SPDI:: NC_000005.10:28927399:G:A
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 500B_downstream_variant,3_prime_UTR_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.28927400G>A, NC_000005.9:g.28927507G>A, XM_047418005.1:c.*105C>T

Select item 14873987844.

rs1487398784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 5:28927669 (GRCh38)
5:28927776 (GRCh37)
Canonical SPDI:: NC_000005.10:28927668:C:A,NC_000005.10:28927668:C:G
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 500B_downstream_variant,missense_variant,coding_sequence_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.28927669C>A, NC_000005.10:g.28927669C>G, NC_000005.9:g.28927776C>A, NC_000005.9:g.28927776C>G, XM_047418005.1:c.637G>T, XM_047418005.1:c.637G>C, XP_047273961.1:p.Val213Phe, XP_047273961.1:p.Val213Leu

Select item 14850290735.

rs1485029073 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28925600 (GRCh38)
5:28925707 (GRCh37)
Canonical SPDI:: NC_000005.10:28925599:G:A
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.28925600G>A, NC_000005.9:g.28925707G>A, XM_047418005.1:c.*1905C>T

Select item 14840498316.

rs1484049831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:28926432 (GRCh38)
5:28926539 (GRCh37)
Canonical SPDI:: NC_000005.10:28926431:G:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.28926432G>T, NC_000005.9:g.28926539G>T, XM_047418005.1:c.*1073C>A

Select item 14839589197.

rs1483958919 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28927658 (GRCh38)
5:28927765 (GRCh37)
Canonical SPDI:: NC_000005.10:28927657:G:A
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 500B_downstream_variant,synonymous_variant,coding_sequence_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.28927658G>A, NC_000005.9:g.28927765G>A, XM_047418005.1:c.648C>T

Select item 14827885048.

rs1482788504 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:28927615 (GRCh38)
5:28927722 (GRCh37)
Canonical SPDI:: NC_000005.10:28927614:C:G
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 500B_downstream_variant,missense_variant,coding_sequence_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28927615C>G, NC_000005.9:g.28927722C>G, XM_047418005.1:c.691G>C, XP_047273961.1:p.Gly231Arg

Select item 14825477379.

rs1482547737 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28924929 (GRCh38)
5:28925036 (GRCh37)
Canonical SPDI:: NC_000005.10:28924928:G:A
Gene:: LSP1P3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28924929G>A, NC_000005.9:g.28925036G>A

Select item 148242650210.

rs1482426502 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:28927550 (GRCh38)
5:28927657 (GRCh37)
Canonical SPDI:: NC_000005.10:28927549:C:A
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 500B_downstream_variant,missense_variant,coding_sequence_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.28927550C>A, NC_000005.9:g.28927657C>A, XM_047418005.1:c.756G>T, XP_047273961.1:p.Leu252Phe

Select item 148206024211.

rs1482060242 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28927028 (GRCh38)
5:28927135 (GRCh37)
Canonical SPDI:: NC_000005.10:28927027:G:A
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.28927028G>A, NC_000005.9:g.28927135G>A, XM_047418005.1:c.*477C>T, NR_033961.1:n.159G>A

Select item 148179909412.

rs1481799094 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:28927280 (GRCh38)
5:28927387 (GRCh37)
Canonical SPDI:: NC_000005.10:28927279:C:G,NC_000005.10:28927279:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.28927280C>G, NC_000005.10:g.28927280C>T, NC_000005.9:g.28927387C>G, NC_000005.9:g.28927387C>T, XM_047418005.1:c.*225G>C, XM_047418005.1:c.*225G>A, NR_033961.1:n.411C>G, NR_033961.1:n.411C>T

Select item 148152747013.

rs1481527470 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 5:28925310 (GRCh38)
5:28925417 (GRCh37)
Canonical SPDI:: NC_000005.10:28925309:T:C,NC_000005.10:28925309:T:G
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28925310T>C, NC_000005.10:g.28925310T>G, NC_000005.9:g.28925417T>C, NC_000005.9:g.28925417T>G

Select item 147990107014.

rs1479901070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28925793 (GRCh38)
5:28925900 (GRCh37)
Canonical SPDI:: NC_000005.10:28925792:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28925793C>T, NC_000005.9:g.28925900C>T, XM_047418005.1:c.*1712G>A

Select item 147769885015.

rs1477698850 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:28927617 (GRCh38)
5:28927724 (GRCh37)
Canonical SPDI:: NC_000005.10:28927616:A:C
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: downstream_transcript_variant,missense_variant,coding_sequence_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28927617A>C, NC_000005.9:g.28927724A>C, XM_047418005.1:c.689T>G, XP_047273961.1:p.Leu230Trp

Select item 147490602816.

rs1474906028 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:28926465 (GRCh38)
5:28926572 (GRCh37)
Canonical SPDI:: NC_000005.10:28926464:A:C
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.28926465A>C, NC_000005.9:g.28926572A>C, XM_047418005.1:c.*1040T>G

Select item 147486155717.

rs1474861557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28925429 (GRCh38)
5:28925536 (GRCh37)
Canonical SPDI:: NC_000005.10:28925428:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.28925429C>T, NC_000005.9:g.28925536C>T

Select item 147447742218.

rs1474477422 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:28926418 (GRCh38)
5:28926525 (GRCh37)
Canonical SPDI:: NC_000005.10:28926417:A:G
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.28926418A>G, NC_000005.9:g.28926525A>G, XM_047418005.1:c.*1087T>C

Select item 147303288219.

rs1473032882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:28926249 (GRCh38)
5:28926356 (GRCh37)
Canonical SPDI:: NC_000005.10:28926248:C:A,NC_000005.10:28926248:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00028/5 (TOMMO)
T=0.00055/1 (Korea1K)
HGVS:: NC_000005.10:g.28926249C>A, NC_000005.10:g.28926249C>T, NC_000005.9:g.28926356C>A, NC_000005.9:g.28926356C>T, XM_047418005.1:c.*1256G>T, XM_047418005.1:c.*1256G>A

Select item 147241621020.

rs1472416210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28927650 (GRCh38)
5:28927757 (GRCh37)
Canonical SPDI:: NC_000005.10:28927649:C:T
Gene:: LSP1P3 (Varview), LOC124901178 (Varview)
Functional Consequence:: downstream_transcript_variant,missense_variant,coding_sequence_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000071/1 (TOMMO)
HGVS:: NC_000005.10:g.28927650C>T, NC_000005.9:g.28927757C>T, XM_047418005.1:c.656G>A, XP_047273961.1:p.Arg219Lys