SNP Links for Gene (Select 729159) - SNP

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Select item 14906017741.

rs1490601774 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 16:60360314 (GRCh38)
16:60394218 (GRCh37)
Canonical SPDI:: NC_000016.10:60360313:A:T
Gene:: LOC101927605 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000016.10:g.60360314A>T, NC_000016.9:g.60394218A>T, XR_007065083.1:n.222A>T

Select item 14894991562.

rs1489499156 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:60358667 (GRCh38)
16:60392571 (GRCh37)
Canonical SPDI:: NC_000016.10:60358666:C:T
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.60358667C>T, NC_000016.9:g.60392571C>T, NG_068155.1:g.1227G>A, NM_001282301.2:c.1036G>A, NM_001282301.1:c.1036G>A

Select item 14894475473.

rs1489447547 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:60359584 (GRCh38)
16:60393488 (GRCh37)
Canonical SPDI:: NC_000016.10:60359583:G:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.60359584G>A, NC_000016.9:g.60393488G>A, NG_068155.1:g.310C>T, NM_001282301.2:c.119C>T, NM_001282301.1:c.119C>T

Select item 14890848914.

rs1489084891 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:60358581 (GRCh38)
16:60392485 (GRCh37)
Canonical SPDI:: NC_000016.10:60358580:G:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.60358581G>A, NC_000016.9:g.60392485G>A, NG_068155.1:g.1313C>T, NM_001282301.2:c.1122C>T, NM_001282301.1:c.1122C>T

Select item 14890356005.

rs1489035600 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:60359488 (GRCh38)
16:60393392 (GRCh37)
Canonical SPDI:: NC_000016.10:60359487:C:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.60359488C>A, NC_000016.9:g.60393392C>A, NG_068155.1:g.406G>T, NM_001282301.2:c.215G>T, NM_001282301.1:c.215G>T

Select item 14886576616.

rs1488657661 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:60359452 (GRCh38)
16:60393356 (GRCh37)
Canonical SPDI:: NC_000016.10:60359451:G:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000016.10:g.60359452G>A, NC_000016.9:g.60393356G>A, NG_068155.1:g.442C>T, NM_001282301.2:c.251C>T, NM_001282301.1:c.251C>T

Select item 14885205537.

rs1488520553 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:60358323 (GRCh38)
16:60392227 (GRCh37)
Canonical SPDI:: NC_000016.10:60358322:C:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.60358323C>A, NC_000016.9:g.60392227C>A, NG_068155.1:g.1571G>T, NM_001282301.2:c.*132G>T

Select item 14883957408.

rs1488395740 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:60360223 (GRCh38)
16:60394127 (GRCh37)
Canonical SPDI:: NC_000016.10:60360222:G:C
Gene:: LOC101927605 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.60360223G>C, NC_000016.9:g.60394127G>C, XR_007065083.1:n.131G>C

Select item 14878651659.

rs1487865165 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:60359064 (GRCh38)
16:60392968 (GRCh37)
Canonical SPDI:: NC_000016.10:60359063:C:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.60359064C>A, NC_000016.9:g.60392968C>A, NG_068155.1:g.830G>T, NM_001282301.2:c.639G>T, NM_001282301.1:c.639G>T

Select item 148692937310.

rs1486929373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:60360324 (GRCh38)
16:60394228 (GRCh37)
Canonical SPDI:: NC_000016.10:60360323:C:G,NC_000016.10:60360323:C:T
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.60360324C>G, NC_000016.10:g.60360324C>T, NC_000016.9:g.60394228C>G, NC_000016.9:g.60394228C>T, XR_007065083.1:n.232C>G, XR_007065083.1:n.232C>T

Select item 148687832111.

rs1486878321 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:60361439 (GRCh38)
16:60395343 (GRCh37)
Canonical SPDI:: NC_000016.10:60361438:A:G
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.60361439A>G, NC_000016.9:g.60395343A>G

Select item 148633984612.

rs1486339846 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:60360043 (GRCh38)
16:60393947 (GRCh37)
Canonical SPDI:: NC_000016.10:60360042:G:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000038/10 (TOPMED)
A=0.000071/1 (TOMMO)
A=0.000342/1 (KOREAN)
A=0.000468/3 (1000Genomes)
HGVS:: NC_000016.10:g.60360043G>A, NC_000016.9:g.60393947G>A

Select item 148535772013.

rs1485357720 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:60360946 (GRCh38)
16:60394850 (GRCh37)
Canonical SPDI:: NC_000016.10:60360945:T:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.60360946T>A, NC_000016.9:g.60394850T>A

Select item 148403807614.

rs1484038076 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:60357916 (GRCh38)
16:60391820 (GRCh37)
Canonical SPDI:: NC_000016.10:60357915:T:C
Gene:: LOC101927605 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00007/9 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000016.10:g.60357916T>C, NC_000016.9:g.60391820T>C, NG_068155.1:g.1978A>G, NM_001282301.2:c.*539A>G

Select item 148319720615.

rs1483197206 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:60357543 (GRCh38)
16:60391447 (GRCh37)
Canonical SPDI:: NC_000016.10:60357542:C:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
G=0.000177/3 (TOMMO)
HGVS:: NC_000016.10:g.60357543C>G, NC_000016.9:g.60391447C>G

Select item 148318537316.

rs1483185373 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:60360237 (GRCh38)
16:60394141 (GRCh37)
Canonical SPDI:: NC_000016.10:60360236:T:G
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.60360237T>G, NC_000016.9:g.60394141T>G, XR_007065083.1:n.145T>G

Select item 148298878917.

rs1482988789 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:60358991 (GRCh38)
16:60392895 (GRCh37)
Canonical SPDI:: NC_000016.10:60358990:C:T
Gene:: LOC101927605 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.60358991C>T, NC_000016.9:g.60392895C>T, NG_068155.1:g.903G>A, NM_001282301.2:c.712G>A, NM_001282301.1:c.712G>A

Select item 148230419518.

rs1482304195 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:60360477 (GRCh38)
16:60394381 (GRCh37)
Canonical SPDI:: NC_000016.10:60360476:T:C
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.60360477T>C, NC_000016.9:g.60394381T>C, XR_007065083.1:n.385T>C

Select item 148198671819.

rs1481986718 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:60360980 (GRCh38)
16:60394884 (GRCh37)
Canonical SPDI:: NC_000016.10:60360979:A:G
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.60360980A>G, NC_000016.9:g.60394884A>G

Select item 148148209820.

rs1481482098 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:60361284 (GRCh38)
16:60395188 (GRCh37)
Canonical SPDI:: NC_000016.10:60361283:T:A
Gene:: LOC101927605 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.60361284T>A, NC_000016.9:g.60395188T>A

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