SNP Links for Gene (Select 728716) - SNP

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Select item 14910232511.

rs1491023251 has merged into rs905731679 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 1:3947652 (GRCh38)
1:4007712 (GRCh37)
Canonical SPDI:: NC_000001.11:3947651:AAAAAAA:AAAAAA,NC_000001.11:3947651:AAAAAAA:AAAAAAAA
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.000326/43 (GnomAD)
-=0.000404/107 (TOPMED)
HGVS:: NC_000001.11:g.3947658del, NC_000001.11:g.3947658dup, NC_000001.10:g.4007718del, NC_000001.10:g.4007718dup

Select item 14909563262.

rs1490956326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3945912 (GRCh38)
1:4005972 (GRCh37)
Canonical SPDI:: NC_000001.11:3945911:G:A
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.3945912G>A, NC_000001.10:g.4005972G>A

Select item 14909270473.

rs1490927047 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:3940235 (GRCh38)
1:4000295 (GRCh37)
Canonical SPDI:: NC_000001.11:3940234:C:T
Gene:: LINC01346 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3940235C>T, NC_000001.10:g.4000295C>T

Select item 14906729294.

rs1490672929 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:3946785 (GRCh38)
1:4006845 (GRCh37)
Canonical SPDI:: NC_000001.11:3946784:T:G
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3946785T>G, NC_000001.10:g.4006845T>G

Select item 14904984735.

rs1490498473 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3939762 (GRCh38)
1:3999822 (GRCh37)
Canonical SPDI:: NC_000001.11:3939761:G:A
Gene:: LINC01346 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3939762G>A, NC_000001.10:g.3999822G>A

Select item 14904198466.

rs1490419846 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:3952702 (GRCh38)
1:4012762 (GRCh37)
Canonical SPDI:: NC_000001.11:3952701:A:C
Gene:: LINC01346 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3952702A>C, NC_000001.10:g.4012762A>C

Select item 14903492367.

rs1490349236 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:3946049 (GRCh38)
1:4006109 (GRCh37)
Canonical SPDI:: NC_000001.11:3946048:T:G
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3946049T>G, NC_000001.10:g.4006109T>G

Select item 14901437278.

rs1490143727 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:3939927 (GRCh38)
1:3999987 (GRCh37)
Canonical SPDI:: NC_000001.11:3939926:C:G
Gene:: LINC01346 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3939927C>G, NC_000001.10:g.3999987C>G

Select item 14898550349.

rs1489855034 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:3946381 (GRCh38)
1:4006441 (GRCh37)
Canonical SPDI:: NC_000001.11:3946380:C:T
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.3946381C>T, NC_000001.10:g.4006441C>T

Select item 148959872910.

rs1489598729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:3942640 (GRCh38)
1:4002700 (GRCh37)
Canonical SPDI:: NC_000001.11:3942639:G:C
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.00003/8 (TOPMED)
C=0.00006/1 (TOMMO)
C=0.000684/2 (KOREAN)
HGVS:: NC_000001.11:g.3942640G>C, NC_000001.10:g.4002700G>C

Select item 148949173611.

rs1489491736 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3948484 (GRCh38)
1:4008544 (GRCh37)
Canonical SPDI:: NC_000001.11:3948483:G:A
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3948484G>A, NC_000001.10:g.4008544G>A, NR_147024.1:n.230C>T

Select item 148913514912.

rs1489135149 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:3941697 (GRCh38)
1:4001757 (GRCh37)
Canonical SPDI:: NC_000001.11:3941696:G:C
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3941697G>C, NC_000001.10:g.4001757G>C

Select item 148908507313.

rs1489085073 has merged into rs144974444 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:3942351 (GRCh38)
1:4002411 (GRCh37)
Canonical SPDI:: NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:3942339:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.275/11 (GENOME_DK)
HGVS:: NC_000001.11:g.3942351_3942369del, NC_000001.11:g.3942352_3942369del, NC_000001.11:g.3942353_3942369del, NC_000001.11:g.3942354_3942369del, NC_000001.11:g.3942355_3942369del, NC_000001.11:g.3942356_3942369del, NC_000001.11:g.3942357_3942369del, NC_000001.11:g.3942358_3942369del, NC_000001.11:g.3942359_3942369del, NC_000001.11:g.3942360_3942369del, NC_000001.11:g.3942361_3942369del, NC_000001.11:g.3942362_3942369del, NC_000001.11:g.3942363_3942369del, NC_000001.11:g.3942364_3942369del, NC_000001.11:g.3942365_3942369del, NC_000001.11:g.3942366_3942369del, NC_000001.11:g.3942367_3942369del, NC_000001.11:g.3942368_3942369del, NC_000001.11:g.3942369del, NC_000001.11:g.3942369dup, NC_000001.11:g.3942368_3942369dup, NC_000001.11:g.3942367_3942369dup, NC_000001.11:g.3942366_3942369dup, NC_000001.11:g.3942365_3942369dup, NC_000001.11:g.3942364_3942369dup, NC_000001.11:g.3942363_3942369dup, NC_000001.11:g.3942362_3942369dup, NC_000001.10:g.4002411_4002429del, NC_000001.10:g.4002412_4002429del, NC_000001.10:g.4002413_4002429del, NC_000001.10:g.4002414_4002429del, NC_000001.10:g.4002415_4002429del, NC_000001.10:g.4002416_4002429del, NC_000001.10:g.4002417_4002429del, NC_000001.10:g.4002418_4002429del, NC_000001.10:g.4002419_4002429del, NC_000001.10:g.4002420_4002429del, NC_000001.10:g.4002421_4002429del, NC_000001.10:g.4002422_4002429del, NC_000001.10:g.4002423_4002429del, NC_000001.10:g.4002424_4002429del, NC_000001.10:g.4002425_4002429del, NC_000001.10:g.4002426_4002429del, NC_000001.10:g.4002427_4002429del, NC_000001.10:g.4002428_4002429del, NC_000001.10:g.4002429del, NC_000001.10:g.4002429dup, NC_000001.10:g.4002428_4002429dup, NC_000001.10:g.4002427_4002429dup, NC_000001.10:g.4002426_4002429dup, NC_000001.10:g.4002425_4002429dup, NC_000001.10:g.4002424_4002429dup, NC_000001.10:g.4002423_4002429dup, NC_000001.10:g.4002422_4002429dup

Select item 148877331314.

rs1488773313 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:3951014 (GRCh38)
1:4011074 (GRCh37)
Canonical SPDI:: NC_000001.11:3951013:G:T
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3951014G>T, NC_000001.10:g.4011074G>T

Select item 148851797615.

rs1488517976 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3948890 (GRCh38)
1:4008950 (GRCh37)
Canonical SPDI:: NC_000001.11:3948889:G:A
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3948890G>A, NC_000001.10:g.4008950G>A, NR_147024.1:n.91C>T

Select item 148830526216.

rs1488305262 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:3940326 (GRCh38)
1:4000386 (GRCh37)
Canonical SPDI:: NC_000001.11:3940325:A:G
Gene:: LINC01346 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000108/2 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.3940326A>G, NC_000001.10:g.4000386A>G

Select item 148812183417.

rs1488121834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3950306 (GRCh38)
1:4010366 (GRCh37)
Canonical SPDI:: NC_000001.11:3950305:G:A
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000036/5 (GnomAD)
A=0.00006/16 (TOPMED)
HGVS:: NC_000001.11:g.3950306G>A, NC_000001.10:g.4010366G>A

Select item 148795614218.

rs1487956142 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3947341 (GRCh38)
1:4007401 (GRCh37)
Canonical SPDI:: NC_000001.11:3947340:G:A
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.3947341G>A, NC_000001.10:g.4007401G>A

Select item 148785641119.

rs1487856411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:3948090 (GRCh38)
1:4008150 (GRCh37)
Canonical SPDI:: NC_000001.11:3948089:C:G,NC_000001.11:3948089:C:T
Gene:: LINC01346 (Varview), LINC01345 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.3948090C>G, NC_000001.11:g.3948090C>T, NC_000001.10:g.4008150C>G, NC_000001.10:g.4008150C>T, NR_147024.1:n.624G>C, NR_147024.1:n.624G>A

Select item 148750073820.

rs1487500738 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:3941180 (GRCh38)
1:4001240 (GRCh37)
Canonical SPDI:: NC_000001.11:3941179:G:C
Gene:: LINC01346 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3941180G>C, NC_000001.10:g.4001240G>C

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