SNP Links for Gene (Select 728622) - SNP

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Select item 14909933671.

rs1490993367 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:16987638 (GRCh38)
12:17140572 (GRCh37)
Canonical SPDI:: NC_000012.12:16987637:A:G
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.16987638A>G, NC_000012.11:g.17140572A>G

Select item 14909678312.

rs1490967831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:16988675 (GRCh38)
12:17141609 (GRCh37)
Canonical SPDI:: NC_000012.12:16988674:G:A
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000036/5 (GnomAD)
A=0.000042/11 (TOPMED)
HGVS:: NC_000012.12:g.16988675G>A, NC_000012.11:g.17141609G>A

Select item 14904092183.

rs1490409218 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:16989196 (GRCh38)
12:17142130 (GRCh37)
Canonical SPDI:: NC_000012.12:16989195:C:T
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.16989196C>T, NC_000012.11:g.17142130C>T, NR_036619.1:n.450C>T

Select item 14896550534.

rs1489655053 has merged into rs144109882 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 12:16990287 (GRCh38)
12:17143221 (GRCh37)
Canonical SPDI:: NC_000012.12:16990286:AAAAAAA:AAAAAA
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000012.12:g.16990293del, NC_000012.11:g.17143227del, NR_036619.1:n.1547del

Select item 14890351955.

rs1489035195 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:16991068 (GRCh38)
12:17144002 (GRCh37)
Canonical SPDI:: NC_000012.12:16991067:C:G
Gene:: SKP1P2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.16991068C>G, NC_000012.11:g.17144002C>G, NG_022950.2:g.522C>G

Select item 14886476396.

rs1488647639 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:16988176 (GRCh38)
12:17141110 (GRCh37)
Canonical SPDI:: NC_000012.12:16988175:G:C
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000136/19 (GnomAD)
HGVS:: NC_000012.12:g.16988176G>C, NC_000012.11:g.17141110G>C

Select item 14867668267.

rs1486766826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:16987195 (GRCh38)
12:17140129 (GRCh37)
Canonical SPDI:: NC_000012.12:16987194:T:C
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.16987195T>C, NC_000012.11:g.17140129T>C

Select item 14867179838.

rs1486717983 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATGCA>- [Show Flanks]
Chromosome:: 12:16990758 (GRCh38)
12:17143692 (GRCh37)
Canonical SPDI:: NC_000012.12:16990755:CAAATGCA:CA
Gene:: SKP1P2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: CA=0./0 (ALFA)
HGVS:: NC_000012.12:g.16990758_16990763del, NC_000012.11:g.17143692_17143697del, NG_022950.2:g.212_217del

Select item 14862847369.

rs1486284736 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:16990079 (GRCh38)
12:17143013 (GRCh37)
Canonical SPDI:: NC_000012.12:16990078:A:G
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.16990079A>G, NC_000012.11:g.17143013A>G, NR_036619.1:n.1333A>G

Select item 148569550310.

rs1485695503 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:16991027 (GRCh38)
12:17143961 (GRCh37)
Canonical SPDI:: NC_000012.12:16991026:G:A,NC_000012.12:16991026:G:T
Gene:: SKP1P2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.16991027G>A, NC_000012.12:g.16991027G>T, NC_000012.11:g.17143961G>A, NC_000012.11:g.17143961G>T, NG_022950.2:g.481G>A, NG_022950.2:g.481G>T

Select item 148421283511.

rs1484212835 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:16987370 (GRCh38)
12:17140304 (GRCh37)
Canonical SPDI:: NC_000012.12:16987369:T:A
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.16987370T>A, NC_000012.11:g.17140304T>A

Select item 148416056112.

rs1484160561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:16989856 (GRCh38)
12:17142790 (GRCh37)
Canonical SPDI:: NC_000012.12:16989855:A:T
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.001369/4 (KOREAN)
HGVS:: NC_000012.12:g.16989856A>T, NC_000012.11:g.17142790A>T, NR_036619.1:n.1110A>T

Select item 148369073913.

rs1483690739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:16988583 (GRCh38)
12:17141517 (GRCh37)
Canonical SPDI:: NC_000012.12:16988582:G:A
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.16988583G>A, NC_000012.11:g.17141517G>A, XR_931397.3:n.51C>T, XR_931397.2:n.76C>T, XR_931397.1:n.51C>T

Select item 148299864714.

rs1482998647 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 12:16987751 (GRCh38)
12:17140685 (GRCh37)
Canonical SPDI:: NC_000012.12:16987750:T:C,NC_000012.12:16987750:T:G
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.16987751T>C, NC_000012.12:g.16987751T>G, NC_000012.11:g.17140685T>C, NC_000012.11:g.17140685T>G

Select item 148196020815.

rs1481960208 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:16990194 (GRCh38)
12:17143128 (GRCh37)
Canonical SPDI:: NC_000012.12:16990193:C:T
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.16990194C>T, NC_000012.11:g.17143128C>T, NR_036619.1:n.1448C>T

Select item 148175723516.

rs1481757235 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 12:16986946 (GRCh38)
12:17139880 (GRCh37)
Canonical SPDI:: NC_000012.12:16986945:AA:A
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.16986947del, NC_000012.11:g.17139881del

Select item 148170247717.

rs1481702477 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:16988194 (GRCh38)
12:17141128 (GRCh37)
Canonical SPDI:: NC_000012.12:16988193:A:T
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.16988194A>T, NC_000012.11:g.17141128A>T

Select item 147988513418.

rs1479885134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:16989341 (GRCh38)
12:17142275 (GRCh37)
Canonical SPDI:: NC_000012.12:16989340:C:A
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000012.12:g.16989341C>A, NC_000012.11:g.17142275C>A, NR_036619.1:n.595C>A

Select item 147948643219.

rs1479486432 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:16988292 (GRCh38)
12:17141226 (GRCh37)
Canonical SPDI:: NC_000012.12:16988291:A:G
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.16988292A>G, NC_000012.11:g.17141226A>G

Select item 147930846820.

rs1479308468 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:16988825 (GRCh38)
12:17141759 (GRCh37)
Canonical SPDI:: NC_000012.12:16988824:T:C
Gene:: SKP1P2 (Varview), LOC105369677 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.16988825T>C, NC_000012.11:g.17141759T>C, NR_036619.1:n.79T>C

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