SNP Links for Gene (Select 728196) - SNP

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Select item 14915491481.

rs1491549148 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:111512396 (GRCh38)
11:111383122 (GRCh37)
Canonical SPDI:: NC_000011.10:111512396:T:TT
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
HGVS:: NC_000011.10:g.111512397dup, NC_000011.9:g.111383122dup

Select item 14910996672.

rs1491099667 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:111512396 (GRCh38)
11:111383121 (GRCh37)
Canonical SPDI:: NC_000011.10:111512395:AT:
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00201/9 (ALFA)
-=0.00057/16 (TOMMO)
HGVS:: NC_000011.10:g.111512396_111512397del, NC_000011.9:g.111383121_111383122del

Select item 14907698043.

rs1490769804 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:111509426 (GRCh38)
11:111380151 (GRCh37)
Canonical SPDI:: NC_000011.10:111509425:A:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111509426A>T, NC_000011.9:g.111380151A>T

Select item 14905160084.

rs1490516008 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111512856 (GRCh38)
11:111383581 (GRCh37)
Canonical SPDI:: NC_000011.10:111512855:C:T
Gene:: BTG4 (Varview), HOATZ (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111512856C>T, NC_000011.9:g.111383581C>T

Select item 14904849965.

rs1490484996 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:111513731 (GRCh38)
11:111384456 (GRCh37)
Canonical SPDI:: NC_000011.10:111513730:T:C
Gene:: BTG4 (Varview), HOATZ (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.111513731T>C, NC_000011.9:g.111384456T>C, NR_147706.1:n.985T>C

Select item 14902796256.

rs1490279625 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:111510470 (GRCh38)
11:111381195 (GRCh37)
Canonical SPDI:: NC_000011.10:111510469:T:A
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111510470T>A, NC_000011.9:g.111381195T>A

Select item 14902138727.

rs1490213872 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:111510796 (GRCh38)
11:111381521 (GRCh37)
Canonical SPDI:: NC_000011.10:111510795:G:A
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.111510796G>A, NC_000011.9:g.111381521G>A, NR_147706.1:n.195G>A

Select item 14902074698.

rs1490207469 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:111512671 (GRCh38)
11:111383396 (GRCh37)
Canonical SPDI:: NC_000011.10:111512670:C:G,NC_000011.10:111512670:C:T
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.111512671C>G, NC_000011.10:g.111512671C>T, NC_000011.9:g.111383396C>G, NC_000011.9:g.111383396C>T

Select item 14897353329.

rs1489735332 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:111513257 (GRCh38)
11:111383982 (GRCh37)
Canonical SPDI:: NC_000011.10:111513256:G:A
Gene:: BTG4 (Varview), HOATZ (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.111513257G>A, NC_000011.9:g.111383982G>A, NR_147706.1:n.511G>A

Select item 148965288010.

rs1489652880 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:111511424 (GRCh38)
11:111382149 (GRCh37)
Canonical SPDI:: NC_000011.10:111511423:T:C
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.111511424T>C, NC_000011.9:g.111382149T>C

Select item 148959880811.

rs1489598808 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:111512456 (GRCh38)
11:111383181 (GRCh37)
Canonical SPDI:: NC_000011.10:111512455:A:G
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.111512456A>G, NC_000011.9:g.111383181A>G

Select item 148895029312.

rs1488950293 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:111511547 (GRCh38)
11:111382272 (GRCh37)
Canonical SPDI:: NC_000011.10:111511546:G:A
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.111511547G>A, NC_000011.9:g.111382272G>A

Select item 148736761313.

rs1487367613 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:111509877 (GRCh38)
11:111380602 (GRCh37)
Canonical SPDI:: NC_000011.10:111509876:T:C
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111509877T>C, NC_000011.9:g.111380602T>C

Select item 148732612814.

rs1487326128 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111510168 (GRCh38)
11:111380893 (GRCh37)
Canonical SPDI:: NC_000011.10:111510167:C:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.111510168C>T, NC_000011.9:g.111380893C>T

Select item 148687910015.

rs1486879100 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111510842 (GRCh38)
11:111381567 (GRCh37)
Canonical SPDI:: NC_000011.10:111510841:C:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.111510842C>T, NC_000011.9:g.111381567C>T, NR_147706.1:n.241C>T

Select item 148669638316.

rs1486696383 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:111508922 (GRCh38)
11:111379647 (GRCh37)
Canonical SPDI:: NC_000011.10:111508921:G:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.111508922G>T, NC_000011.9:g.111379647G>T

Select item 148667029817.

rs1486670298 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111509282 (GRCh38)
11:111380007 (GRCh37)
Canonical SPDI:: NC_000011.10:111509281:C:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.111509282C>T, NC_000011.9:g.111380007C>T

Select item 148481706918.

rs1484817069 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 11:111509699 (GRCh38)
11:111380425 (GRCh37)
Canonical SPDI:: NC_000011.10:111509699::C
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.111509699_111509700insC, NC_000011.9:g.111380424_111380425insC

Select item 148444750119.

rs1484447501 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:111512453 (GRCh38)
11:111383178 (GRCh37)
Canonical SPDI:: NC_000011.10:111512452:C:T
Gene:: BTG4 (Varview), MIR34B (Varview), MIR34C (Varview), MIR34BHG (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.111512453C>T, NC_000011.9:g.111383178C>T

Select item 148426765620.

rs1484267656 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:111509943 (GRCh38)
11:111380668 (GRCh37)
Canonical SPDI:: NC_000011.10:111509942:G:A,NC_000011.10:111509942:G:T
Gene:: BTG4 (Varview), MIR34BHG (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00005/5 (GnomAD)
T=0.00131/37 (TOMMO)
T=0.02572/75 (KOREAN)
HGVS:: NC_000011.10:g.111509943G>A, NC_000011.10:g.111509943G>T, NC_000011.9:g.111380668G>A, NC_000011.9:g.111380668G>T

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