SNP Links for Gene (Select 728137) - SNP

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Select item 14690791621.

rs1469079162 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9401551 (GRCh38)
Y:9239160 (GRCh37)
Canonical SPDI:: NC_000024.10:9401550:G:T
Gene:: TSPY3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.9401551G>T, NC_000024.9:g.9239160G>T, NW_025791821.1:g.268778G>T

Select item 14575026832.

rs1457502683 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9400101 (GRCh38)
Y:9237710 (GRCh37)
Canonical SPDI:: NC_000024.10:9400100:G:A
Gene:: TSPY3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,non_coding_transcript_variant,synonymous_variant
Validated:: by frequency,by cluster
MAF:: A=0.00007/1 (GnomAD)
HGVS:: NC_000024.10:g.9400101G>A, NC_000024.9:g.9237710G>A, NW_025791821.1:g.267330G>A, XM_005272742.5:c.799G>A, XM_005272742.4:c.799G>A, XM_005272742.3:c.799G>A, XM_005272742.2:c.799G>A, XM_005272742.1:c.799G>A, XR_949063.3:n.838G>A, XR_949063.2:n.813G>A, XR_949063.1:n.819G>A, XM_011544004.3:c.792G>A, XM_011544004.2:c.792G>A, XM_011544004.1:c.792G>A, NM_001077697.2:c.799G>A, XP_005272799.1:p.Ala267Thr, NP_001071165.2:p.Ala267Thr

Select item 14486422283.

rs1448642228 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9398976 (GRCh38)
Y:9236585 (GRCh37)
Canonical SPDI:: NC_000024.10:9398975:G:T
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.263/239 (KOREAN)
HGVS:: NC_000024.10:g.9398976G>T, NC_000024.9:g.9236585G>T, NW_025791821.1:g.266205G>T

Select item 14348226984.

rs1434822698 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9396816 (GRCh38)
Y:9234425 (GRCh37)
Canonical SPDI:: NC_000024.10:9396815:G:A
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.9396816G>A, NC_000024.9:g.9234425G>A, NW_025791821.1:g.264044G>A

Select item 14177434605.

rs1417743460 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9399661 (GRCh38)
Y:9237270 (GRCh37)
Canonical SPDI:: NC_000024.10:9399660:G:A
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.086/26 (ALFA)
G=0./0 (GnomAD_exomes)
HGVS:: NC_000024.10:g.9399661G>A, NC_000024.9:g.9237270G>A, NW_025791821.1:g.266890A>G

Select item 13914636036.

rs1391463603 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9399914 (GRCh38)
Y:9237523 (GRCh37)
Canonical SPDI:: NC_000024.10:9399913:G:A
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9399914G>A, NC_000024.9:g.9237523G>A, NW_025791821.1:g.267143G>A

Select item 13862664217.

rs1386266421 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9399921 (GRCh38)
Y:9237530 (GRCh37)
Canonical SPDI:: NC_000024.10:9399920:G:T
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.9399921G>T, NC_000024.9:g.9237530G>T, NW_025791821.1:g.267150G>T

Select item 13793539118.

rs1379353911 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:9399986 (GRCh38)
Y:9237595 (GRCh37)
Canonical SPDI:: NC_000024.10:9399985:G:C
Gene:: TSPY3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.9399986G>C, NC_000024.9:g.9237595G>C, NW_025791821.1:g.267215G>C, XM_005272742.5:c.684G>C, XM_005272742.4:c.684G>C, XM_005272742.3:c.684G>C, XM_005272742.2:c.684G>C, XM_005272742.1:c.684G>C, XR_949063.3:n.723G>C, XR_949063.2:n.698G>C, XR_949063.1:n.704G>C, XM_011544004.3:c.677G>C, XM_011544004.2:c.677G>C, XM_011544004.1:c.677G>C, NM_001077697.2:c.684G>C, XP_005272799.1:p.Arg228Ser, XP_011542306.1:p.Gly226Ala, NP_001071165.2:p.Arg228Ser

Select item 13698250279.

rs1369825027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:9397020 (GRCh38)
Y:9234629 (GRCh37)
Canonical SPDI:: NC_000024.10:9397019:C:A
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.0798/110 (KOREAN)
C=0.25/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.9397020C>A, NC_000024.9:g.9234629C>A, NW_025791821.1:g.264248C>A

Select item 136897790010.

rs1368977900 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:9400087 (GRCh38)
Y:9237696 (GRCh37)
Canonical SPDI:: NC_000024.10:9400086:C:G
Gene:: TSPY3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.9400087C>G, NC_000024.9:g.9237696C>G, NW_025791821.1:g.267316C>G, XM_005272742.5:c.785C>G, XM_005272742.4:c.785C>G, XM_005272742.3:c.785C>G, XM_005272742.2:c.785C>G, XM_005272742.1:c.785C>G, XR_949063.3:n.824C>G, XR_949063.2:n.799C>G, XR_949063.1:n.805C>G, XM_011544004.3:c.778C>G, XM_011544004.2:c.778C>G, XM_011544004.1:c.778C>G, NM_001077697.2:c.785C>G, XP_005272799.1:p.Ser262Cys, XP_011542306.1:p.Leu260Val, NP_001071165.2:p.Ser262Cys

Select item 135984539811.

rs1359845398 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: Y:9399653 (GRCh38)
Y:9237262 (GRCh37)
Canonical SPDI:: NC_000024.10:9399652:C:G,NC_000024.10:9399652:C:T
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (SGDP_PRJ)
HGVS:: NC_000024.10:g.9399653C>G, NC_000024.10:g.9399653C>T, NC_000024.9:g.9237262C>G, NC_000024.9:g.9237262C>T, NW_025791821.1:g.266882C>G, NW_025791821.1:g.266882C>T

Select item 135216265012.

rs1352162650 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:9400033 (GRCh38)
Y:9237642 (GRCh37)
Canonical SPDI:: NC_000024.10:9400032:A:C
Gene:: TSPY3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,non_coding_transcript_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.00006/2 (GnomAD_exomes)
HGVS:: NC_000024.10:g.9400033A>C, NC_000024.9:g.9237642A>C, NW_025791821.1:g.267262A>C, XM_005272742.5:c.731A>C, XM_005272742.4:c.731A>C, XM_005272742.3:c.731A>C, XM_005272742.2:c.731A>C, XM_005272742.1:c.731A>C, XR_949063.3:n.770A>C, XR_949063.2:n.745A>C, XR_949063.1:n.751A>C, XM_011544004.3:c.724A>C, XM_011544004.2:c.724A>C, XM_011544004.1:c.724A>C, NM_001077697.2:c.731A>C, XP_005272799.1:p.Glu244Ala, NP_001071165.2:p.Glu244Ala

Select item 135093620613.

rs1350936206 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:9397154 (GRCh38)
Y:9234763 (GRCh37)
Canonical SPDI:: NC_000024.10:9397153:G:C
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9397154G>C, NC_000024.9:g.9234763G>C, NW_025791821.1:g.264382G>C

Select item 131963126114.

rs1319631261 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9396640 (GRCh38)
Y:9234249 (GRCh37)
Canonical SPDI:: NC_000024.10:9396639:G:T
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.9396640G>T, NC_000024.9:g.9234249G>T, NW_025791821.1:g.263868G>T

Select item 130893980815.

rs1308939808 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:9400031 (GRCh38)
Y:9237640 (GRCh37)
Canonical SPDI:: NC_000024.10:9400030:G:T
Gene:: TSPY3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,non_coding_transcript_variant,synonymous_variant
HGVS:: NC_000024.10:g.9400031G>T, NC_000024.9:g.9237640G>T, NW_025791821.1:g.267260G>T, XM_005272742.5:c.729G>T, XM_005272742.4:c.729G>T, XM_005272742.3:c.729G>T, XM_005272742.2:c.729G>T, XM_005272742.1:c.729G>T, XR_949063.3:n.768G>T, XR_949063.2:n.743G>T, XR_949063.1:n.749G>T, XM_011544004.3:c.722G>T, XM_011544004.2:c.722G>T, XM_011544004.1:c.722G>T, NM_001077697.2:c.729G>T, XP_011542306.1:p.Trp241Leu

Select item 130500386016.

rs1305003860 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:9397040 (GRCh38)
Y:9234649 (GRCh37)
Canonical SPDI:: NC_000024.10:9397039:T:G
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9397040T>G, NC_000024.9:g.9234649T>G, NW_025791821.1:g.264268T>G

Select item 129536542217.

rs1295365422 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:9399908 (GRCh38)
Y:9237517 (GRCh37)
Canonical SPDI:: NC_000024.10:9399907:A:G
Gene:: TSPY3 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.9399908A>G, NC_000024.9:g.9237517A>G, NW_025791821.1:g.267137A>G

Select item 129183471318.

rs1291834713 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9400308 (GRCh38)
Y:9237917 (GRCh37)
Canonical SPDI:: NC_000024.10:9400307:G:A
Gene:: TSPY3 (Varview)
Functional Consequence:: coding_sequence_variant,3_prime_UTR_variant,non_coding_transcript_variant,synonymous_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (SGDP_PRJ)
A=0.0035/4 (KOREAN)
HGVS:: NC_000024.10:g.9400308G>A, NC_000024.9:g.9237917G>A, NW_025791821.1:g.267537G>A, XM_005272742.5:c.*26G>A, XM_005272742.4:c.*26G>A, XM_005272742.3:c.*26G>A, XM_005272742.2:c.*26G>A, XM_005272742.1:c.*26G>A, XR_949063.3:n.950G>A, XR_949063.2:n.925G>A, XR_949063.1:n.931G>A, XM_011544004.3:c.*26G>A, XM_011544004.2:c.*26G>A, XM_011544004.1:c.*26G>A, NM_001077697.2:c.900G>A

Select item 128492237419.

rs1284922374 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:9397165 (GRCh38)
Y:9234774 (GRCh37)
Canonical SPDI:: NC_000024.10:9397164:C:T
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.9397165C>T, NC_000024.9:g.9234774C>T, NW_025791821.1:g.264393C>T

Select item 127457931120.

rs1274579311 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:9396825 (GRCh38)
Y:9234434 (GRCh37)
Canonical SPDI:: NC_000024.10:9396824:G:A
Gene:: TSPY3 (Varview), FAM197Y6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.1356/192 (KOREAN)
G=0.5/82 (SGDP_PRJ)
HGVS:: NC_000024.10:g.9396825G>A, NC_000024.9:g.9234434G>A, NW_025791821.1:g.264053G>A

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