SNP Links for Gene (Select 724022) - SNP

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Links from Gene

Items: 1 to 20 of 392

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Select item 14890807151.

rs1489080715 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:110055696 (GRCh38)
X:109298924 (GRCh37)
Canonical SPDI:: NC_000023.11:110055695:C:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/2 (GnomAD)
T=0.000026/7 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000023.11:g.110055696C>T, NC_000023.10:g.109298924C>T, XM_017029894.3:c.-9795C>T

Select item 14890224372.

rs1489022437 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:110055503 (GRCh38)
X:109298731 (GRCh37)
Canonical SPDI:: NC_000023.11:110055502:G:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/3 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.110055503G>T, NC_000023.10:g.109298731G>T, XM_017029894.3:c.-9988G>T

Select item 14887530783.

rs1488753078 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:110054709 (GRCh38)
X:109297937 (GRCh37)
Canonical SPDI:: NC_000023.11:110054708:G:A,NC_000023.11:110054708:G:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.110054709G>A, NC_000023.11:g.110054709G>T, NC_000023.10:g.109297937G>A, NC_000023.10:g.109297937G>T, XM_017029894.3:c.-10782G>A, XM_017029894.3:c.-10782G>T

Select item 14885605394.

rs1488560539 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:110054063 (GRCh38)
X:109297291 (GRCh37)
Canonical SPDI:: NC_000023.11:110054062:A:G
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000045/12 (TOPMED)
G=0.000067/7 (GnomAD)
HGVS:: NC_000023.11:g.110054063A>G, NC_000023.10:g.109297291A>G, XM_017029894.3:c.-11428A>G

Select item 14884250095.

rs1488425009 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:110054292 (GRCh38)
X:109297520 (GRCh37)
Canonical SPDI:: NC_000023.11:110054291:G:A,NC_000023.11:110054291:G:C
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.110054292G>A, NC_000023.11:g.110054292G>C, NC_000023.10:g.109297520G>A, NC_000023.10:g.109297520G>C, XM_017029894.3:c.-11199G>A, XM_017029894.3:c.-11199G>C

Select item 14861552316.

rs1486155231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:110054663 (GRCh38)
X:109297891 (GRCh37)
Canonical SPDI:: NC_000023.11:110054662:C:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.110054663C>T, NC_000023.10:g.109297891C>T, XM_017029894.3:c.-10828C>T

Select item 14829552407.

rs1482955240 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:110054691 (GRCh38)
X:109297919 (GRCh37)
Canonical SPDI:: NC_000023.11:110054690:C:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.110054691C>T, NC_000023.10:g.109297919C>T, XM_017029894.3:c.-10800C>T

Select item 14821846288.

rs1482184628 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:110053889 (GRCh38)
X:109297117 (GRCh37)
Canonical SPDI:: NC_000023.11:110053888:T:C
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.110053889T>C, NC_000023.10:g.109297117T>C, XM_017029894.3:c.-11602T>C

Select item 14815770659.

rs1481577065 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:110055362 (GRCh38)
X:109298590 (GRCh37)
Canonical SPDI:: NC_000023.11:110055361:G:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/2 (ALFA)
HGVS:: NC_000023.11:g.110055362G>T, NC_000023.10:g.109298590G>T, XM_017029894.3:c.-10129G>T, NR_030381.1:n.34G>T

Select item 148022740210.

rs1480227402 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:110055275 (GRCh38)
X:109298503 (GRCh37)
Canonical SPDI:: NC_000023.11:110055274:T:G
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.110055275T>G, NC_000023.10:g.109298503T>G, XM_017029894.3:c.-10216T>G

Select item 147860503311.

rs1478605033 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:110055665 (GRCh38)
X:109298893 (GRCh37)
Canonical SPDI:: NC_000023.11:110055664:A:G
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.110055665A>G, NC_000023.10:g.109298893A>G, XM_017029894.3:c.-9826A>G

Select item 147857458012.

rs1478574580 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:110054056 (GRCh38)
X:109297284 (GRCh37)
Canonical SPDI:: NC_000023.11:110054055:A:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.110054056A>T, NC_000023.10:g.109297284A>T, XM_017029894.3:c.-11435A>T

Select item 147772532613.

rs1477725326 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:110053561 (GRCh38)
X:109296789 (GRCh37)
Canonical SPDI:: NC_000023.11:110053560:A:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.110053561A>T, NC_000023.10:g.109296789A>T, XM_017029894.3:c.-11930A>T

Select item 147759462014.

rs1477594620 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:110053437 (GRCh38)
X:109296665 (GRCh37)
Canonical SPDI:: NC_000023.11:110053436:G:A
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
A=0.00009/1 (TOMMO)
HGVS:: NC_000023.11:g.110053437G>A, NC_000023.10:g.109296665G>A, XM_017029897.2:c.-9G>A, XM_017029897.1:c.-9G>A

Select item 147725247715.

rs1477252477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:110055341 (GRCh38)
X:109298569 (GRCh37)
Canonical SPDI:: NC_000023.11:110055340:G:A
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,5_prime_UTR_variant
HGVS:: NC_000023.11:g.110055341G>A, NC_000023.10:g.109298569G>A, XM_017029894.3:c.-10150G>A, NR_030381.1:n.13G>A

Select item 147716485016.

rs1477164850 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:110053587 (GRCh38)
X:109296815 (GRCh37)
Canonical SPDI:: NC_000023.11:110053586:G:A
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
A=0.00198/25 (TOMMO)
A=0.002055/6 (KOREAN)
HGVS:: NC_000023.11:g.110053587G>A, NC_000023.10:g.109296815G>A, XM_017029894.3:c.-11904G>A

Select item 147711412417.

rs1477114124 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:110055103 (GRCh38)
X:109298331 (GRCh37)
Canonical SPDI:: NC_000023.11:110055102:C:T
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.110055103C>T, NC_000023.10:g.109298331C>T, XM_017029894.3:c.-10388C>T

Select item 147659998118.

rs1476599981 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:110055775 (GRCh38)
X:109299003 (GRCh37)
Canonical SPDI:: NC_000023.11:110055774:C:A
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.110055775C>A, NC_000023.10:g.109299003C>A, XM_017029894.3:c.-9716C>A

Select item 147521452519.

rs1475214525 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:110054958 (GRCh38)
X:109298186 (GRCh37)
Canonical SPDI:: NC_000023.11:110054957:T:C
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.110054958T>C, NC_000023.10:g.109298186T>C, XM_017029894.3:c.-10533T>C

Select item 147400157420.

rs1474001574 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:110055482 (GRCh38)
X:109298710 (GRCh37)
Canonical SPDI:: NC_000023.11:110055481:A:G
Gene:: TMEM164 (Varview), MIR652 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.110055482A>G, NC_000023.10:g.109298710A>G, XM_017029894.3:c.-10009A>G