SNP Links for Gene (Select 7221) - SNP

Links from Gene

Items: 1 to 20 of 3412

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Select item 14915055501.

rs1491505550 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 11:3629330 (GRCh38)
11:3650560 (GRCh37)
Canonical SPDI:: NC_000011.10:3629329:CG:
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00201/30 (TOMMO)
-=0.00685/4 (NorthernSweden)
-=0.01163/226 (GnomAD)
HGVS:: NC_000011.10:g.3629330_3629331del, NC_000011.9:g.3650560_3650561del

Select item 14914759492.

rs1491475949 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:3629304 (GRCh38)
11:3650534 (GRCh37)
Canonical SPDI:: NC_000011.10:3629302:ACA:A
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.3629304_3629305del, NC_000011.9:g.3650534_3650535del

Select item 14914004003.

rs1491400400 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 11:3629383 (GRCh38)
11:3650614 (GRCh37)
Canonical SPDI:: NC_000011.10:3629383:T:TGT
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGT=0./0 (ALFA)
TG=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.3629384_3629385insGT, NC_000011.9:g.3650614_3650615insGT

Select item 14913327344.

rs1491332734 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TG
Chromosome:: no mapping
Canonical SPDI:

Select item 14912391975.

rs1491239197 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:3629385 (GRCh38)
11:3650615 (GRCh37)
Canonical SPDI:: NC_000011.10:3629382:ATAT:AT
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATAT=0.00211/25 (ALFA)
HGVS:: NC_000011.10:g.3629383AT[1], NC_000011.9:g.3650613AT[1]

Select item 14912048556.

rs1491204855 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CATACATG [Show Flanks]
Chromosome:: 11:3629330 (GRCh38)
11:3650561 (GRCh37)
Canonical SPDI:: NC_000011.10:3629330:G:GCATACATG
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GCATACATG=0./0 (ALFA)
HGVS:: NC_000011.10:g.3629331_3629332insCATACATG, NC_000011.9:g.3650561_3650562insCATACATG

Select item 14911121367.

rs1491112136 has merged into rs1554960171 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:3629502 (GRCh38)
11:3650732 (GRCh37)
Canonical SPDI:: NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:3629493:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.0018/3 (Korea1K)
HGVS:: NC_000011.10:g.3629502_3629509del, NC_000011.10:g.3629505_3629509del, NC_000011.10:g.3629506_3629509del, NC_000011.10:g.3629507_3629509del, NC_000011.10:g.3629508_3629509del, NC_000011.10:g.3629509del, NC_000011.10:g.3629509dup, NC_000011.10:g.3629508_3629509dup, NC_000011.10:g.3629507_3629509dup, NC_000011.10:g.3629506_3629509dup, NC_000011.10:g.3629505_3629509dup, NC_000011.9:g.3650732_3650739del, NC_000011.9:g.3650735_3650739del, NC_000011.9:g.3650736_3650739del, NC_000011.9:g.3650737_3650739del, NC_000011.9:g.3650738_3650739del, NC_000011.9:g.3650739del, NC_000011.9:g.3650739dup, NC_000011.9:g.3650738_3650739dup, NC_000011.9:g.3650737_3650739dup, NC_000011.9:g.3650736_3650739dup, NC_000011.9:g.3650735_3650739dup

Select item 14909032138.

rs1490903213 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:3626121 (GRCh38)
11:3647351 (GRCh37)
Canonical SPDI:: NC_000011.10:3626120:A:C
Gene:: TRPC2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.3626121A>C, NC_000011.9:g.3647351A>C

Select item 14907769649.

rs1490776964 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATACATACGTATACATACATA>- [Show Flanks]
Chromosome:: 11:3629322 (GRCh38)
11:3650552 (GRCh37)
Canonical SPDI:: NC_000011.10:3629314:ATACATATATACATACGTATACATACATA:ATACATA
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATACATA=0./0 (ALFA)
-=0.00009/2 (GnomAD)
HGVS:: NC_000011.10:g.3629322_3629343del, NC_000011.9:g.3650552_3650573del

Select item 149050864110.

rs1490508641 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3630411 (GRCh38)
11:3651641 (GRCh37)
Canonical SPDI:: NC_000011.10:3630410:G:A
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.3630411G>A, NC_000011.9:g.3651641G>A

Select item 149028705011.

rs1490287050 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3629584 (GRCh38)
11:3650814 (GRCh37)
Canonical SPDI:: NC_000011.10:3629583:G:A
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000169/2 (ALFA)
A=0.000058/8 (GnomAD)
HGVS:: NC_000011.10:g.3629584G>A, NC_000011.9:g.3650814G>A

Select item 149016462612.

rs1490164626 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:3632221 (GRCh38)
11:3653451 (GRCh37)
Canonical SPDI:: NC_000011.10:3632220:C:G
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.3632221C>G, NC_000011.9:g.3653451C>G

Select item 149001730913.

rs1490017309 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:3630713 (GRCh38)
11:3651943 (GRCh37)
Canonical SPDI:: NC_000011.10:3630712:C:T
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3630713C>T, NC_000011.9:g.3651943C>T

Select item 148979819714.

rs1489798197 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTT>- [Show Flanks]
Chromosome:: 11:3630383 (GRCh38)
11:3651613 (GRCh37)
Canonical SPDI:: NC_000011.10:3630380:TTCTTT:TT
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000022/3 (GnomAD)
-=0.000074/2 (TOMMO)
HGVS:: NC_000011.10:g.3630383_3630386del, NC_000011.9:g.3651613_3651616del

Select item 148969733315.

rs1489697333 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:3636101 (GRCh38)
11:3657331 (GRCh37)
Canonical SPDI:: NC_000011.10:3636100:T:A
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.3636101T>A, NC_000011.9:g.3657331T>A

Select item 148969124316.

rs1489691243 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:3632204 (GRCh38)
11:3653434 (GRCh37)
Canonical SPDI:: NC_000011.10:3632203:T:C
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3632204T>C, NC_000011.9:g.3653434T>C

Select item 148966401117.

rs1489664011 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 11:3637040 (GRCh38)
11:3658270 (GRCh37)
Canonical SPDI:: NC_000011.10:3637039:C:A,NC_000011.10:3637039:C:G
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.3637040C>A, NC_000011.10:g.3637040C>G, NC_000011.9:g.3658270C>A, NC_000011.9:g.3658270C>G

Select item 148966027718.

rs1489660277 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3627369 (GRCh38)
11:3648599 (GRCh37)
Canonical SPDI:: NC_000011.10:3627368:G:A
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3627369G>A, NC_000011.9:g.3648599G>A

Select item 148958977619.

rs1489589776 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:3624983 (GRCh38)
11:3646213 (GRCh37)
Canonical SPDI:: NC_000011.10:3624982:C:T
Gene:: TRPC2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000212/4 (TOMMO)
T=0.00308/9 (KOREAN)
HGVS:: NC_000011.10:g.3624983C>T, NC_000011.9:g.3646213C>T

Select item 148952809020.

rs1489528090 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:3626992 (GRCh38)
11:3648222 (GRCh37)
Canonical SPDI:: NC_000011.10:3626991:A:G
Gene:: TRPC2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00003/8 (TOPMED)
HGVS:: NC_000011.10:g.3626992A>G, NC_000011.9:g.3648222A>G

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