SNP Links for Gene (Select 6845) - SNP

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:57100546 (GRCh38)
Y:59246696 (GRCh37)
Canonical SPDI:: NC_000024.10:57100545:T:C
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57100546T>C, NC_000024.9:g.59246696T>C, NG_021435.2:g.37683T>C, NG_021435.1:g.37748T>C, NC_000023.11:g.155914026T>C, NC_000023.10:g.155143690T>C

Select item 14909352376.

rs1490935237 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:57092109 (GRCh38)
Y:59238259 (GRCh37)
Canonical SPDI:: NC_000024.10:57092108:A:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57092109A>T, NC_000024.9:g.59238259A>T, NG_021435.2:g.29246A>T, NG_021435.1:g.29311A>T, NC_000023.11:g.155905589A>T, NC_000023.10:g.155135253A>T

Select item 14908406707.

rs1490840670 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:57070262 (GRCh38)
Y:59216411 (GRCh37)
Canonical SPDI:: NC_000024.10:57070261:A:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000009/1 (GnomAD)
HGVS:: NC_000024.10:g.57070262A>T, NC_000024.9:g.59216411A>T, NG_021435.2:g.7399A>T, NG_021435.1:g.7463A>T, NC_000023.11:g.155883742A>T, NC_000023.10:g.155113405A>T

Select item 14908364458.

rs1490836445 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:57107680 (GRCh38)
Y:59253830 (GRCh37)
Canonical SPDI:: NC_000024.10:57107679:T:G
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57107680T>G, NC_000024.9:g.59253830T>G, NG_021435.2:g.44817T>G, NG_021435.1:g.44882T>G, NC_000023.11:g.155921160T>G, NC_000023.10:g.155150824T>G

Select item 14908317759.

rs1490831775 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:57109048 (GRCh38)
Y:59255198 (GRCh37)
Canonical SPDI:: NC_000024.10:57109047:T:G
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000036/5 (GnomAD)
HGVS:: NC_000024.10:g.57109048T>G, NC_000024.9:g.59255198T>G, NG_021435.2:g.46185T>G, NG_021435.1:g.46250T>G, NC_000023.11:g.155922528T>G, NC_000023.10:g.155152192T>G

Select item 149081683010.

rs1490816830 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:57106519 (GRCh38)
Y:59252669 (GRCh37)
Canonical SPDI:: NC_000024.10:57106518:A:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0009/4 (ALFA)
HGVS:: NC_000024.10:g.57106519A>T, NC_000024.9:g.59252669A>T, NG_021435.2:g.43656A>T, NG_021435.1:g.43721A>T, NC_000023.11:g.155919999A>T, NC_000023.10:g.155149663A>T

Select item 149077610011.

rs1490776100 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: Y:57120248 (GRCh38)
Y:59266398 (GRCh37)
Canonical SPDI:: NC_000024.10:57120247:TT:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57120249del, NC_000024.9:g.59266399del, NG_021435.2:g.57386del, NG_021435.1:g.57451del, NC_000023.11:g.155933729del, NC_000023.10:g.155163393del

Select item 149075673012.

rs1490756730 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:57093455 (GRCh38)
Y:59239605 (GRCh37)
Canonical SPDI:: NC_000024.10:57093454:T:G
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000024.10:g.57093455T>G, NC_000024.9:g.59239605T>G, NG_021435.2:g.30592T>G, NG_021435.1:g.30657T>G, NC_000023.11:g.155906935T>G, NC_000023.10:g.155136599T>G

Select item 149070278913.

rs1490702789 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: Y:57106739 (GRCh38)
Y:59252889 (GRCh37)
Canonical SPDI:: NC_000024.10:57106738:G:A,NC_000024.10:57106738:G:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57106739G>A, NC_000024.10:g.57106739G>T, NC_000024.9:g.59252889G>A, NC_000024.9:g.59252889G>T, NG_021435.2:g.43876G>A, NG_021435.2:g.43876G>T, NG_021435.1:g.43941G>A, NG_021435.1:g.43941G>T, NC_000023.11:g.155920219G>A, NC_000023.11:g.155920219G>T, NC_000023.10:g.155149883G>A, NC_000023.10:g.155149883G>T

Select item 149069805314.

rs1490698053 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:57079548 (GRCh38)
Y:59225697 (GRCh37)
Canonical SPDI:: NC_000024.10:57079547:C:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57079548C>T, NC_000024.9:g.59225697C>T, NG_021435.2:g.16685C>T, NG_021435.1:g.16749C>T, NC_000023.11:g.155893028C>T, NC_000023.10:g.155122691C>T

Select item 149068128615.

rs1490681286 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:57077753 (GRCh38)
Y:59223902 (GRCh37)
Canonical SPDI:: NC_000024.10:57077752:C:G
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000024.10:g.57077753C>G, NC_000024.9:g.59223902C>G, NG_021435.2:g.14890C>G, NG_021435.1:g.14954C>G, NC_000023.11:g.155891233C>G, NC_000023.10:g.155120896C>G

Select item 149066783216.

rs1490667832 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: Y:57110134 (GRCh38)
Y:59256284 (GRCh37)
Canonical SPDI:: NC_000024.10:57110132:TTT:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000024.10:g.57110134_57110135del, NC_000024.9:g.59256284_59256285del, NG_021435.2:g.47271_47272del, NG_021435.1:g.47336_47337del, NC_000023.11:g.155923614_155923615del, NC_000023.10:g.155153278_155153279del

Select item 149065213017.

rs1490652130 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: Y:57107540 (GRCh38)
Y:59253690 (GRCh37)
Canonical SPDI:: NC_000024.10:57107539:AAAA:AAA
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57107543del, NC_000024.9:g.59253693del, NG_021435.2:g.44680del, NG_021435.1:g.44745del, NC_000023.11:g.155921023del, NC_000023.10:g.155150687del

Select item 149064213118.

rs1490642131 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:57078552 (GRCh38)
Y:59224701 (GRCh37)
Canonical SPDI:: NC_000024.10:57078551:C:T
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57078552C>T, NC_000024.9:g.59224701C>T, NG_021435.2:g.15689C>T, NG_021435.1:g.15753C>T, NC_000023.11:g.155892032C>T, NC_000023.10:g.155121695C>T

Select item 149063805219.

rs1490638052 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:57126428 (GRCh38)
Y:59272578 (GRCh37)
Canonical SPDI:: NC_000024.10:57126427:A:G
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000024.10:g.57126428A>G, NC_000024.9:g.59272578A>G, NG_021435.2:g.63565A>G, NG_021435.1:g.63630A>G, NC_000023.11:g.155939908A>G, NC_000023.10:g.155169572A>G

Select item 149057250120.

rs1490572501 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: Y:57076295 (GRCh38)
Y:59222445 (GRCh37)
Canonical SPDI:: NC_000024.10:57076295:A:AA
Gene:: VAMP7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000024.10:g.57076296dup, NC_000024.9:g.59222445dup, NG_021435.2:g.13433dup, NG_021435.1:g.13497dup, NC_000023.11:g.155889776dup, NC_000023.10:g.155119439dup

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