SNP Links for Gene (Select 664709) - SNP

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Select item 14912891251.

rs1491289125 has merged into rs367613834 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA [Show Flanks]
Chromosome:: 19:11668826 (GRCh38)
19:11779641 (GRCh37)
Canonical SPDI:: NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:11668814:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.05822/34 (NorthernSweden)
-=0.29912/1498 (1000Genomes)
HGVS:: NC_000019.10:g.11668826_11668832del, NC_000019.10:g.11668828_11668832del, NC_000019.10:g.11668829_11668832del, NC_000019.10:g.11668830_11668832del, NC_000019.10:g.11668831_11668832del, NC_000019.10:g.11668832del, NC_000019.10:g.11668832dup, NC_000019.10:g.11668831_11668832dup, NC_000019.10:g.11668830_11668832dup, NC_000019.9:g.11779641_11779647del, NC_000019.9:g.11779643_11779647del, NC_000019.9:g.11779644_11779647del, NC_000019.9:g.11779645_11779647del, NC_000019.9:g.11779646_11779647del, NC_000019.9:g.11779647del, NC_000019.9:g.11779647dup, NC_000019.9:g.11779646_11779647dup, NC_000019.9:g.11779645_11779647dup

Select item 14911040752.

rs1491104075 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 19:11665733 (GRCh38)
19:11776548 (GRCh37)
Canonical SPDI:: NC_000019.10:11665732:TA:
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000037/5 (GnomAD)
HGVS:: NC_000019.10:g.11665733_11665734del, NC_000019.9:g.11776548_11776549del

Select item 14909185083.

rs1490918508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:11668060 (GRCh38)
19:11778875 (GRCh37)
Canonical SPDI:: NC_000019.10:11668059:C:A,NC_000019.10:11668059:C:G,NC_000019.10:11668059:C:T
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
T=0.000342/1 (KOREAN)
T=0.000625/4 (1000Genomes)
G=0.003821/7 (Korea1K)
HGVS:: NC_000019.10:g.11668060C>A, NC_000019.10:g.11668060C>G, NC_000019.10:g.11668060C>T, NC_000019.9:g.11778875C>A, NC_000019.9:g.11778875C>G, NC_000019.9:g.11778875C>T

Select item 14908497634.

rs1490849763 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:11668731 (GRCh38)
19:11779546 (GRCh37)
Canonical SPDI:: NC_000019.10:11668730:T:C
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.11668731T>C, NC_000019.9:g.11779546T>C

Select item 14877971365.

rs1487797136 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:11665872 (GRCh38)
19:11776687 (GRCh37)
Canonical SPDI:: NC_000019.10:11665871:A:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.11665872A>G, NC_000019.9:g.11776687A>G, NR_002944.2:n.1218T>C

Select item 14876530536.

rs1487653053 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:11668723 (GRCh38)
19:11779538 (GRCh37)
Canonical SPDI:: NC_000019.10:11668722:A:C
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.11668723A>C, NC_000019.9:g.11779538A>C

Select item 14859258747.

rs1485925874 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:11665853 (GRCh38)
19:11776668 (GRCh37)
Canonical SPDI:: NC_000019.10:11665852:C:T
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.11665853C>T, NC_000019.9:g.11776668C>T, NR_002944.2:n.1237G>A

Select item 14859209218.

rs1485920921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:11666076 (GRCh38)
19:11776891 (GRCh37)
Canonical SPDI:: NC_000019.10:11666075:C:T
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.11666076C>T, NC_000019.9:g.11776891C>T, NR_002944.2:n.1014G>A

Select item 14829209189.

rs1482920918 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 19:11668096 (GRCh38)
19:11778912 (GRCh37)
Canonical SPDI:: NC_000019.10:11668096:AA:AAA
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAA=0./0 (ALFA)
HGVS:: NC_000019.10:g.11668098dup, NC_000019.9:g.11778913dup

Select item 148240280510.

rs1482402805 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:11668529 (GRCh38)
19:11779344 (GRCh37)
Canonical SPDI:: NC_000019.10:11668528:T:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000019.10:g.11668529T>G, NC_000019.9:g.11779344T>G

Select item 148115238511.

rs1481152385 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:11666251 (GRCh38)
19:11777066 (GRCh37)
Canonical SPDI:: NC_000019.10:11666250:G:A
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.11666251G>A, NC_000019.9:g.11777066G>A, NR_002944.2:n.839C>T

Select item 148094104312.

rs1480941043 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:11668796 (GRCh38)
19:11779611 (GRCh37)
Canonical SPDI:: NC_000019.10:11668795:A:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.11668796A>G, NC_000019.9:g.11779611A>G

Select item 148061044813.

rs1480610448 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:11666919 (GRCh38)
19:11777734 (GRCh37)
Canonical SPDI:: NC_000019.10:11666918:C:T
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.11666919C>T, NC_000019.9:g.11777734C>T, NR_002944.2:n.171G>A

Select item 148022902814.

rs1480229028 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:11665884 (GRCh38)
19:11776699 (GRCh37)
Canonical SPDI:: NC_000019.10:11665883:A:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.11665884A>G, NC_000019.9:g.11776699A>G, NR_002944.2:n.1206T>C

Select item 147831658715.

rs1478316587 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:11668728 (GRCh38)
19:11779543 (GRCh37)
Canonical SPDI:: NC_000019.10:11668727:C:T
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000044/6 (GnomAD)
T=0.000071/1 (TOMMO)
HGVS:: NC_000019.10:g.11668728C>T, NC_000019.9:g.11779543C>T

Select item 147827813216.

rs1478278132 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 19:11666651 (GRCh38)
19:11777466 (GRCh37)
Canonical SPDI:: NC_000019.10:11666650:T:
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.11666651del, NC_000019.9:g.11777466del, NR_002944.2:n.439del

Select item 147769470217.

rs1477694702 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:11667093 (GRCh38)
19:11777908 (GRCh37)
Canonical SPDI:: NC_000019.10:11667092:G:A
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000057/8 (GnomAD)
HGVS:: NC_000019.10:g.11667093G>A, NC_000019.9:g.11777908G>A

Select item 147764360618.

rs1477643606 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:11668853 (GRCh38)
19:11779668 (GRCh37)
Canonical SPDI:: NC_000019.10:11668852:A:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000084/1 (ALFA)
G=0.000053/7 (GnomAD)
G=0.008898/26 (KOREAN)
HGVS:: NC_000019.10:g.11668853A>G, NC_000019.9:g.11779668A>G

Select item 147701743519.

rs1477017435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:11667897 (GRCh38)
19:11778712 (GRCh37)
Canonical SPDI:: NC_000019.10:11667896:G:A
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000106/2 (TOMMO)
A=0.002396/7 (KOREAN)
HGVS:: NC_000019.10:g.11667897G>A, NC_000019.9:g.11778712G>A

Select item 147648128920.

rs1476481289 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:11665755 (GRCh38)
19:11776570 (GRCh37)
Canonical SPDI:: NC_000019.10:11665754:A:G
Gene:: HNRNPA1P10 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/2 (GnomAD)
G=0.000045/12 (TOPMED)
G=0.000248/4 (TOMMO)
G=0.000342/1 (KOREAN)
HGVS:: NC_000019.10:g.11665755A>G, NC_000019.9:g.11776570A>G, NR_002944.2:n.1335T>C

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