SNP Links for Gene (Select 653404) - SNP

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Links from Gene

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Select item 14909846711.

rs1490984671 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:41126693 (GRCh38)
9:69199922 (GRCh37)
Canonical SPDI:: NC_000009.12:41126692:C:T
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00025/3 (ALFA)
HGVS:: NC_000009.12:g.41126693C>T, NC_000009.11:g.69199922C>T, NM_001085476.4:c.*437G>A, NM_001085476.3:c.*437G>A, NM_001085476.2:c.*437G>A, NM_001085476.1:c.*437G>A

Select item 14905830752.

rs1490583075 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:41126796 (GRCh38)
9:69200025 (GRCh37)
Canonical SPDI:: NC_000009.12:41126795:G:C,NC_000009.12:41126795:G:T
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000066/1 (ALFA)
C=0.000004/1 (TOPMED)
T=0.000011/1 (GnomAD)
HGVS:: NC_000009.12:g.41126796G>C, NC_000009.12:g.41126796G>T, NC_000009.11:g.69200025G>C, NC_000009.11:g.69200025G>T, NM_001085476.4:c.*334C>G, NM_001085476.4:c.*334C>A, NM_001085476.3:c.*334C>G, NM_001085476.3:c.*334C>A, NM_001085476.2:c.*334C>G, NM_001085476.2:c.*334C>A, NM_001085476.1:c.*334C>G, NM_001085476.1:c.*334C>A

Select item 14904954583.

rs1490495458 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41126111 (GRCh38)
9:69199340 (GRCh37)
Canonical SPDI:: NC_000009.12:41126110:G:A
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00004/1 (TOMMO)
HGVS:: NC_000009.12:g.41126111G>A, NC_000009.11:g.69199340G>A

Select item 14904494434.

rs1490449443 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:41127643 (GRCh38)
9:69200872 (GRCh37)
Canonical SPDI:: NC_000009.12:41127642:C:T
Gene:: FOXD4L6 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00312/51 (ALFA)
T=0.00276/8 (KOREAN)
T=0.00315/53 (TOMMO)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.41127643C>T, NC_000009.11:g.69200872C>T, NM_001085476.4:c.741G>A, NM_001085476.3:c.741G>A, NM_001085476.2:c.741G>A, NM_001085476.1:c.741G>A

Select item 14903252925.

rs1490325292 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:41126808 (GRCh38)
9:69200037 (GRCh37)
Canonical SPDI:: NC_000009.12:41126807:G:T
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.41126808G>T, NC_000009.11:g.69200037G>T, NM_001085476.4:c.*322C>A, NM_001085476.3:c.*322C>A, NM_001085476.2:c.*322C>A, NM_001085476.1:c.*322C>A

Select item 14895280466.

rs1489528046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41127319 (GRCh38)
9:69200548 (GRCh37)
Canonical SPDI:: NC_000009.12:41127318:G:A
Gene:: FOXD4L6 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.41127319G>A, NC_000009.11:g.69200548G>A, NM_001085476.4:c.1065C>T, NM_001085476.3:c.1065C>T, NM_001085476.2:c.1065C>T, NM_001085476.1:c.1065C>T

Select item 14893988797.

rs1489398879 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:41130006 (GRCh38)
9:69203235 (GRCh37)
Canonical SPDI:: NC_000009.12:41130005:G:C
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00034/4 (ALFA)
C=0.00019/6 (GnomAD)
HGVS:: NC_000009.12:g.41130006G>C, NC_000009.11:g.69203235G>C, NM_001085476.3:c.-1623C>G

Select item 14885673138.

rs1488567313 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:41125945 (GRCh38)
9:69199174 (GRCh37)
Canonical SPDI:: NC_000009.12:41125944:CCCCCC:CCCCC
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CCCCC=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.41125950del, NC_000009.11:g.69199179del

Select item 14882921489.

rs1488292148 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTTATA>- [Show Flanks]
Chromosome:: 9:41126076 (GRCh38)
9:69199305 (GRCh37)
Canonical SPDI:: NC_000009.12:41126071:TATAATTTATA:TATA
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATA=0.001096/13 (ALFA)
-=0.000318/5 (TOMMO)
-=0.000701/88 (GnomAD)
-=0.009912/18 (Korea1K)
HGVS:: NC_000009.12:g.41126076_41126082del, NC_000009.11:g.69199305_69199311del

Select item 148808553710.

rs1488085537 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:41129920 (GRCh38)
9:69203149 (GRCh37)
Canonical SPDI:: NC_000009.12:41129919:C:T
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.41129920C>T, NC_000009.11:g.69203149C>T, NM_001085476.3:c.-1537G>A

Select item 148708463711.

rs1487084637 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41127285 (GRCh38)
9:69200514 (GRCh37)
Canonical SPDI:: NC_000009.12:41127284:G:A
Gene:: FOXD4L6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000048/3 (GnomAD_exomes)
A=0.000177/3 (TOMMO)
A=0.000548/1 (Korea1K)
A=0.000692/2 (KOREAN)
HGVS:: NC_000009.12:g.41127285G>A, NC_000009.11:g.69200514G>A, NM_001085476.4:c.1099C>T, NM_001085476.3:c.1099C>T, NM_001085476.2:c.1099C>T, NM_001085476.1:c.1099C>T, NP_001078945.1:p.Pro367Ser

Select item 148637880512.

rs1486378805 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:41129502 (GRCh38)
9:69202731 (GRCh37)
Canonical SPDI:: NC_000009.12:41129501:T:C
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
C=0.00015/3 (GnomAD)
HGVS:: NC_000009.12:g.41129502T>C, NC_000009.11:g.69202731T>C, NM_001085476.3:c.-1119A>G

Select item 148610324613.

rs1486103246 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 9:41130267 (GRCh38)
9:69203496 (GRCh37)
Canonical SPDI:: NC_000009.12:41130266:A:C,NC_000009.12:41130266:A:G
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.01349/191 (ALFA)
G=0.03453/1483 (GnomAD)
G=0.03611/65 (Korea1K)
G=0.05671/945 (TOMMO)
G=0.14885/415 (KOREAN)
A=0.5/17 (SGDP_PRJ)
HGVS:: NC_000009.12:g.41130267A>C, NC_000009.12:g.41130267A>G, NC_000009.11:g.69203496A>C, NC_000009.11:g.69203496A>G

Select item 148589550414.

rs1485895504 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGATACCTCAGCAGGGCC>- [Show Flanks]
Chromosome:: 9:41127123 (GRCh38)
9:69200352 (GRCh37)
Canonical SPDI:: NC_000009.12:41127119:GCCTGATACCTCAGCAGGGCC:GCC
Gene:: FOXD4L6 (Varview)
Functional Consequence:: inframe_indel,stop_lost,3_prime_UTR_variant,terminator_codon_variant
HGVS:: NC_000009.12:g.41127123_41127140del, NC_000009.11:g.69200352_69200369del, NM_001085476.4:c.1247_*10del, NM_001085476.3:c.1247_*10del, NM_001085476.2:c.1247_*10del, NM_001085476.1:c.1247_*10del

Select item 148554098015.

rs1485540980 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:41127885 (GRCh38)
9:69201115 (GRCh37)
Canonical SPDI:: NC_000009.12:41127885:G:GG
Gene:: FOXD4L6 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.41127886dup, NC_000009.11:g.69201115dup, NM_001085476.4:c.498dup, NM_001085476.3:c.498dup, NM_001085476.2:c.498dup, NM_001085476.1:c.498dup, NP_001078945.1:p.Val167fs

Select item 148552066016.

rs1485520660 [Homo sapiens]

Variant type:: DEL
Alleles:: ATT>- [Show Flanks]
Chromosome:: 9:41126076 (GRCh38)
9:69199305 (GRCh37)
Canonical SPDI:: NC_000009.12:41126075:ATT:
Gene:: LINC03025 (Varview), FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.01551/184 (ALFA)
-=0.01734/290 (TOMMO)
-=0.01833/11 (NorthernSweden)
HGVS:: NC_000009.12:g.41126076_41126078del, NC_000009.11:g.69199305_69199307del

Select item 148539778217.

rs1485397782 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:41129144 (GRCh38)
9:69202373 (GRCh37)
Canonical SPDI:: NC_000009.12:41129143:A:G,NC_000009.12:41129143:A:T
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.41129144A>G, NC_000009.12:g.41129144A>T, NC_000009.11:g.69202373A>G, NC_000009.11:g.69202373A>T, NM_001085476.3:c.-761T>C, NM_001085476.3:c.-761T>A

Select item 148465876818.

rs1484658768 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41127567 (GRCh38)
9:69200796 (GRCh37)
Canonical SPDI:: NC_000009.12:41127566:G:A
Gene:: FOXD4L6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.41127567G>A, NC_000009.11:g.69200796G>A, NM_001085476.4:c.817C>T, NM_001085476.3:c.817C>T, NM_001085476.2:c.817C>T, NM_001085476.1:c.817C>T, NP_001078945.1:p.Leu273Phe

Select item 148443293919.

rs1484432939 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACAG>- [Show Flanks]
Chromosome:: 9:41128775 (GRCh38)
9:69202004 (GRCh37)
Canonical SPDI:: NC_000009.12:41128771:CAGACAG:CAG
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CAG=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.41128775_41128778del, NC_000009.11:g.69202004_69202007del, NM_001085476.3:c.-392_-389del, NM_001085476.1:c.-392_-389del

Select item 148415466920.

rs1484154669 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:41128701 (GRCh38)
9:69201930 (GRCh37)
Canonical SPDI:: NC_000009.12:41128700:A:G
Gene:: FOXD4L6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00004/1 (GnomAD)
HGVS:: NC_000009.12:g.41128701A>G, NC_000009.11:g.69201930A>G, NM_001085476.3:c.-318T>C, NM_001085476.1:c.-318T>C