SNP Links for Gene (Select 650669) - SNP

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Select item 14915000751.

rs1491500075 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGCTGG [Show Flanks]
Chromosome:: 13:113842374 (GRCh38)
13:114545348 (GRCh37)
Canonical SPDI:: NC_000013.11:113842374:GGGGCTGGGGCTGG:GGGGCTGGGGCTGGGGCTGG
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGCTGGGGCTGGGGCTGG=0./0 (ALFA)
GGGGCT=0.000008/2 (TOPMED)
GGGGCT=0.000022/3 (GnomAD)
HGVS:: NC_000013.11:g.113842377GGCTGG[3], NC_000013.10:g.114545350GGCTGG[3], NG_029703.1:g.26688AGCCCC[3], NR_044995.2:n.431GGCTGG[3], NM_001039799.1:c.-443GGCTGG[3]

Select item 14914241372.

rs1491424137 [Homo sapiens]

Variant type:: INS
Alleles:: ->AAAG [Show Flanks]
Chromosome:: 13:113825258 (GRCh38)
13:114528232 (GRCh37)
Canonical SPDI:: NC_000013.11:113825258::AAAG
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAG=0.0002/1 (ALFA)
HGVS:: NC_000013.11:g.113825258_113825259insAAAG, NC_000013.10:g.114528231_114528232insAAAG, NG_029703.1:g.43815_43816insCTTT

Select item 14912866403.

rs1491286640 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 13:113833887 (GRCh38)
13:114536860 (GRCh37)
Canonical SPDI:: NC_000013.11:113833886:AG:
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.113833887_113833888del, NC_000013.10:g.114536860_114536861del, NG_029703.1:g.35186_35187del

Select item 14912416064.

rs1491241606 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AGGA
Chromosome:: no mapping
Canonical SPDI:

Select item 14911725655.

rs1491172565 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTGGTGTGACAGGTCGGTGTGACAGGCA [Show Flanks]
Chromosome:: 13:113833887 (GRCh38)
13:114536861 (GRCh37)
Canonical SPDI:: NC_000013.11:113833887:GTGTGACAGGCAGTGGTGTGACAGGTCGGTGTGACAGGCA:GTGTGACAGGCAGTGGTGTGACAGGTCGGTGTGACAGGCAGTGGTGTGACAGGTCGGTGTGACAGGCA
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: GTGTGACAGGCAGTGGTGTGACAGGTCG=0.000191/25 (GnomAD)
HGVS:: NC_000013.11:g.113833900_113833927dup, NC_000013.10:g.114536873_114536900dup, NG_029703.1:g.35159_35186dup

Select item 14911471056.

rs1491147105 has merged into rs112864001 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 13:113842184 (GRCh38)
13:114545157 (GRCh37)
Canonical SPDI:: NC_000013.11:113842181:CACA:CA
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACA=0.000796/13 (ALFA)
-=0.000169/22 (GnomAD)
-=0.001557/26 (TOMMO)
HGVS:: NC_000013.11:g.113842182CA[1], NC_000013.10:g.114545155CA[1], NG_029703.1:g.26889TG[1]

Select item 14911175037.

rs1491117503 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 13:113825258 (GRCh38)
13:114528231 (GRCh37)
Canonical SPDI:: NC_000013.11:113825257:AG:
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113825258_113825259del, NC_000013.10:g.114528231_114528232del, NG_029703.1:g.43815_43816del

Select item 14907796938.

rs1490779693 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:113830527 (GRCh38)
13:114533500 (GRCh37)
Canonical SPDI:: NC_000013.11:113830526:C:T
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.113830527C>T, NC_000013.10:g.114533500C>T, NG_029703.1:g.38547G>A

Select item 14906732219.

rs1490673221 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:113829493 (GRCh38)
13:114532466 (GRCh37)
Canonical SPDI:: NC_000013.11:113829492:A:C
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.113829493A>C, NC_000013.10:g.114532466A>C, NG_029703.1:g.39581T>G

Select item 149050005610.

rs1490500056 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:113816097 (GRCh38)
13:114519070 (GRCh37)
Canonical SPDI:: NC_000013.11:113816096:T:C
Gene:: TMEM255B (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000038/5 (GnomAD)
HGVS:: NC_000013.11:g.113816097T>C, NC_000013.10:g.114519070T>C, NM_182614.4:c.*4194T>C, NM_001348663.2:c.*4194T>C

Select item 149043771411.

rs1490437714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:113842079 (GRCh38)
13:114545052 (GRCh37)
Canonical SPDI:: NC_000013.11:113842078:A:G
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000013.11:g.113842079A>G, NC_000013.10:g.114545052A>G, NG_029703.1:g.26995T>C

Select item 149041033512.

rs1490410335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:113840562 (GRCh38)
13:114543535 (GRCh37)
Canonical SPDI:: NC_000013.11:113840561:G:A,NC_000013.11:113840561:G:T
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113840562G>A, NC_000013.11:g.113840562G>T, NC_000013.10:g.114543535G>A, NC_000013.10:g.114543535G>T, NG_029703.1:g.28512C>T, NG_029703.1:g.28512C>A

Select item 149034611113.

rs1490346111 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:113830127 (GRCh38)
13:114533100 (GRCh37)
Canonical SPDI:: NC_000013.11:113830126:C:T
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.113830127C>T, NC_000013.10:g.114533100C>T, NG_029703.1:g.38947G>A

Select item 149028458214.

rs1490284582 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:113821974 (GRCh38)
13:114524947 (GRCh37)
Canonical SPDI:: NC_000013.11:113821973:A:G
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000013.11:g.113821974A>G, NC_000013.10:g.114524947A>G, NG_029703.1:g.47100T>C, NM_000820.4:c.1866T>C, NM_000820.3:c.1866T>C, NM_000820.2:c.1866T>C, NM_001143946.1:c.969T>C, NM_001143945.1:c.1047T>C

Select item 149017617415.

rs1490176174 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:113816666 (GRCh38)
13:114519639 (GRCh37)
Canonical SPDI:: NC_000013.11:113816665:G:A
Gene:: TMEM255B (Varview), GAS6-AS1 (Varview), LOC124903220 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000013.11:g.113816666G>A, NC_000013.10:g.114519639G>A, NM_182614.4:c.*4763G>A, NM_001348663.2:c.*4763G>A

Select item 149008826216.

rs1490088262 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:113840422 (GRCh38)
13:114543395 (GRCh37)
Canonical SPDI:: NC_000013.11:113840421:G:A
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.113840422G>A, NC_000013.10:g.114543395G>A, NG_029703.1:g.28652C>T

Select item 149008275517.

rs1490082755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:113841206 (GRCh38)
13:114544179 (GRCh37)
Canonical SPDI:: NC_000013.11:113841205:G:A
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113841206G>A, NC_000013.10:g.114544179G>A, NG_029703.1:g.27868C>T

Select item 148994365618.

rs1489943656 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:113825397 (GRCh38)
13:114528370 (GRCh37)
Canonical SPDI:: NC_000013.11:113825396:G:C
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.113825397G>C, NC_000013.10:g.114528370G>C, NG_029703.1:g.43677C>G

Select item 148974827619.

rs1489748276 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:113824292 (GRCh38)
13:114527265 (GRCh37)
Canonical SPDI:: NC_000013.11:113824291:G:A
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
A=0.00001/1 (GnomAD)
A=0.13708/400 (KOREAN)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000013.11:g.113824292G>A, NC_000013.10:g.114527265G>A, NG_029703.1:g.44782C>T

Select item 148973836020.

rs1489738360 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:113839715 (GRCh38)
13:114542688 (GRCh37)
Canonical SPDI:: NC_000013.11:113839714:C:T
Gene:: GAS6 (Varview), GAS6-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113839715C>T, NC_000013.10:g.114542688C>T, NG_029703.1:g.29359G>A

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