SNP Links for Gene (Select 648791) - SNP

Links from Gene

Items: 1 to 20 of 1309

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Select item 14908711071.

rs1490871107 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5084955 (GRCh38)
6:5085189 (GRCh37)
Canonical SPDI:: NC_000006.12:5084954:C:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.5084955C>T, NC_000006.11:g.5085189C>T, NG_051651.1:g.180996G>A

Select item 14903296972.

rs1490329697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:5085929 (GRCh38)
6:5086163 (GRCh37)
Canonical SPDI:: NC_000006.12:5085928:C:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.5085929C>A, NC_000006.11:g.5086163C>A, NG_051651.1:g.180022G>T, NM_001145115.3:c.444C>A, NM_001145115.2:c.444C>A, NM_001145115.1:c.444C>A, NP_001138587.1:p.Phe148Leu

Select item 14900532313.

rs1490053231 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5085240 (GRCh38)
6:5085474 (GRCh37)
Canonical SPDI:: NC_000006.12:5085239:G:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000006.12:g.5085240G>A, NC_000006.11:g.5085474G>A, NG_051651.1:g.180711C>T

Select item 14900370004.

rs1490037000 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 6:5085467 (GRCh38)
6:5085701 (GRCh37)
Canonical SPDI:: NC_000006.12:5085466:T:A,NC_000006.12:5085466:T:G
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5085467T>A, NC_000006.12:g.5085467T>G, NC_000006.11:g.5085701T>A, NC_000006.11:g.5085701T>G, NG_051651.1:g.180484A>T, NG_051651.1:g.180484A>C, NM_001145115.3:c.-19T>A, NM_001145115.3:c.-19T>G

Select item 14897268405.

rs1489726840 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:5085760 (GRCh38)
6:5085995 (GRCh37)
Canonical SPDI:: NC_000006.12:5085760::A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,frameshift_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5085760_5085761insA, NC_000006.11:g.5085994_5085995insA, NG_051651.1:g.180190_180191insT, NM_001145115.3:c.275_276insA, NM_001145115.2:c.275_276insA, NM_001145115.1:c.275_276insA, NP_001138587.1:p.Gln94fs

Select item 14895738936.

rs1489573893 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:5084298 (GRCh38)
6:5084532 (GRCh37)
Canonical SPDI:: NC_000006.12:5084297:C:A,NC_000006.12:5084297:C:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.5084298C>A, NC_000006.12:g.5084298C>T, NC_000006.11:g.5084532C>A, NC_000006.11:g.5084532C>T, NG_051651.1:g.181653G>T, NG_051651.1:g.181653G>A

Select item 14893217837.

rs1489321783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:5084419 (GRCh38)
6:5084653 (GRCh37)
Canonical SPDI:: NC_000006.12:5084418:C:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000196/52 (TOPMED)
A=0.000285/40 (GnomAD)
HGVS:: NC_000006.12:g.5084419C>A, NC_000006.11:g.5084653C>A, NG_051651.1:g.181532G>T

Select item 14892829848.

rs1489282984 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5085117 (GRCh38)
6:5085351 (GRCh37)
Canonical SPDI:: NC_000006.12:5085116:C:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.5085117C>T, NC_000006.11:g.5085351C>T, NG_051651.1:g.180834G>A

Select item 14886750989.

rs1488675098 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:5086017 (GRCh38)
6:5086251 (GRCh37)
Canonical SPDI:: NC_000006.12:5086016:G:C
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.5086017G>C, NC_000006.11:g.5086251G>C, NG_051651.1:g.179934C>G, NM_001145115.3:c.532G>C, NM_001145115.2:c.532G>C, NM_001145115.1:c.532G>C, NP_001138587.1:p.Gly178Arg

Select item 148812342410.

rs1488123424 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:5085966 (GRCh38)
6:5086200 (GRCh37)
Canonical SPDI:: NC_000006.12:5085965:C:G
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5085966C>G, NC_000006.11:g.5086200C>G, NG_051651.1:g.179985G>C, NM_001145115.3:c.481C>G, NM_001145115.2:c.481C>G, NM_001145115.1:c.481C>G, NP_001138587.1:p.Leu161Val

Select item 148803157611.

rs1488031576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5086556 (GRCh38)
6:5086790 (GRCh37)
Canonical SPDI:: NC_000006.12:5086555:G:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,synonymous_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5086556G>A, NC_000006.11:g.5086790G>A, NG_051651.1:g.179395C>T, NM_001145115.3:c.1071G>A, NM_001145115.2:c.1071G>A, NM_001145115.1:c.1071G>A

Select item 148799603312.

rs1487996033 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5086244 (GRCh38)
6:5086478 (GRCh37)
Canonical SPDI:: NC_000006.12:5086243:C:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,synonymous_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5086244C>T, NC_000006.11:g.5086478C>T, NG_051651.1:g.179707G>A, NM_001145115.3:c.759C>T, NM_001145115.2:c.759C>T, NM_001145115.1:c.759C>T

Select item 148727812113.

rs1487278121 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAC>- [Show Flanks]
Chromosome:: 6:5086509 (GRCh38)
6:5086743 (GRCh37)
Canonical SPDI:: NC_000006.12:5086503:ACAACAAC:ACAAC
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,inframe_deletion,intron_variant
Validated:: by frequency,by alfa
MAF:: ACAAC=0.000111/1 (ALFA)
-=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5086506AAC[1], NC_000006.11:g.5086740AAC[1], NG_051651.1:g.179442TGT[1], NM_001145115.3:c.1021AAC[1], NM_001145115.2:c.1021AAC[1], NM_001145115.1:c.1021AAC[1], NP_001138587.1:p.Asn342del

Select item 148704663114.

rs1487046631 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:5085921 (GRCh38)
6:5086155 (GRCh37)
Canonical SPDI:: NC_000006.12:5085920:A:C
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5085921A>C, NC_000006.11:g.5086155A>C, NG_051651.1:g.180030T>G, NM_001145115.3:c.436A>C, NM_001145115.2:c.436A>C, NM_001145115.1:c.436A>C, NP_001138587.1:p.Lys146Gln

Select item 148700989215.

rs1487009892 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:5085960 (GRCh38)
6:5086194 (GRCh37)
Canonical SPDI:: NC_000006.12:5085959:G:A,NC_000006.12:5085959:G:C
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.5085960G>A, NC_000006.12:g.5085960G>C, NC_000006.11:g.5086194G>A, NC_000006.11:g.5086194G>C, NG_051651.1:g.179991C>T, NG_051651.1:g.179991C>G, NM_001145115.3:c.475G>A, NM_001145115.3:c.475G>C, NM_001145115.2:c.475G>A, NM_001145115.2:c.475G>C, NM_001145115.1:c.475G>A, NM_001145115.1:c.475G>C, NP_001138587.1:p.Ala159Thr, NP_001138587.1:p.Ala159Pro

Select item 148694024516.

rs1486940245 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:5086365 (GRCh38)
6:5086599 (GRCh37)
Canonical SPDI:: NC_000006.12:5086364:G:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,stop_gained,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.5086365G>T, NC_000006.11:g.5086599G>T, NG_051651.1:g.179586C>A, NM_001145115.3:c.880G>T, NM_001145115.2:c.880G>T, NM_001145115.1:c.880G>T, NP_001138587.1:p.Glu294Ter

Select item 148675670517.

rs1486756705 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 6:5087025 (GRCh38)
6:5087259 (GRCh37)
Canonical SPDI:: NC_000006.12:5087024:G:C,NC_000006.12:5087024:G:T
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5087025G>C, NC_000006.12:g.5087025G>T, NC_000006.11:g.5087259G>C, NC_000006.11:g.5087259G>T, NG_051651.1:g.178926C>G, NG_051651.1:g.178926C>A, NM_001145115.3:c.*463G>C, NM_001145115.3:c.*463G>T, NM_001145115.2:c.*463G>C, NM_001145115.2:c.*463G>T, NM_001145115.1:c.*463G>C, NM_001145115.1:c.*463G>T

Select item 148636113118.

rs1486361131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5084177 (GRCh38)
6:5084411 (GRCh37)
Canonical SPDI:: NC_000006.12:5084176:G:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.5084177G>A, NC_000006.11:g.5084411G>A, NG_051651.1:g.181774C>T

Select item 148596291019.

rs1485962910 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:5086913 (GRCh38)
6:5087147 (GRCh37)
Canonical SPDI:: NC_000006.12:5086912:T:G
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.5086913T>G, NC_000006.11:g.5087147T>G, NG_051651.1:g.179038A>C, NM_001145115.3:c.*351T>G, NM_001145115.2:c.*351T>G, NM_001145115.1:c.*351T>G

Select item 148520562420.

rs1485205624 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:5085348 (GRCh38)
6:5085582 (GRCh37)
Canonical SPDI:: NC_000006.12:5085347:T:A
Gene:: LYRM4 (Varview), PPP1R3G (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.5085348T>A, NC_000006.11:g.5085582T>A, NG_051651.1:g.180603A>T, NM_001145115.3:c.-138T>A

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