SNP Links for Gene (Select 645191) - SNP

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Select item 14915862891.

rs1491586289 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:2297304 (GRCh38)
19:2297303 (GRCh37)
Canonical SPDI:: NC_000019.10:2297303:CT:
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.2297304_2297305del, NC_000019.9:g.2297303_2297304del

Select item 14914685992.

rs1491468599 has merged into rs751028773 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:2309344 (GRCh38)
19:2309343 (GRCh37)
Canonical SPDI:: NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2309336:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINGO3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.00275/61 (TOMMO)
HGVS:: NC_000019.10:g.2309344_2309358del, NC_000019.10:g.2309345_2309358del, NC_000019.10:g.2309346_2309358del, NC_000019.10:g.2309347_2309358del, NC_000019.10:g.2309348_2309358del, NC_000019.10:g.2309349_2309358del, NC_000019.10:g.2309350_2309358del, NC_000019.10:g.2309351_2309358del, NC_000019.10:g.2309352_2309358del, NC_000019.10:g.2309353_2309358del, NC_000019.10:g.2309354_2309358del, NC_000019.10:g.2309355_2309358del, NC_000019.10:g.2309356_2309358del, NC_000019.10:g.2309357_2309358del, NC_000019.10:g.2309358del, NC_000019.10:g.2309358dup, NC_000019.10:g.2309357_2309358dup, NC_000019.10:g.2309356_2309358dup, NC_000019.10:g.2309355_2309358dup, NC_000019.10:g.2309354_2309358dup, NC_000019.10:g.2309353_2309358dup, NC_000019.10:g.2309352_2309358dup, NC_000019.10:g.2309351_2309358dup, NC_000019.10:g.2309350_2309358dup, NC_000019.10:g.2309349_2309358dup, NC_000019.10:g.2309348_2309358dup, NC_000019.10:g.2309347_2309358dup, NC_000019.10:g.2309346_2309358dup, NC_000019.10:g.2309345_2309358dup, NC_000019.10:g.2309344_2309358dup, NC_000019.10:g.2309358_2309359insTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.10:g.2309358_2309359insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.10:g.2309358_2309359insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.2309343_2309357del, NC_000019.9:g.2309344_2309357del, NC_000019.9:g.2309345_2309357del, NC_000019.9:g.2309346_2309357del, NC_000019.9:g.2309347_2309357del, NC_000019.9:g.2309348_2309357del, NC_000019.9:g.2309349_2309357del, NC_000019.9:g.2309350_2309357del, NC_000019.9:g.2309351_2309357del, NC_000019.9:g.2309352_2309357del, NC_000019.9:g.2309353_2309357del, NC_000019.9:g.2309354_2309357del, NC_000019.9:g.2309355_2309357del, NC_000019.9:g.2309356_2309357del, NC_000019.9:g.2309357del, NC_000019.9:g.2309357dup, NC_000019.9:g.2309356_2309357dup, NC_000019.9:g.2309355_2309357dup, NC_000019.9:g.2309354_2309357dup, NC_000019.9:g.2309353_2309357dup, NC_000019.9:g.2309352_2309357dup, NC_000019.9:g.2309351_2309357dup, NC_000019.9:g.2309350_2309357dup, NC_000019.9:g.2309349_2309357dup, NC_000019.9:g.2309348_2309357dup, NC_000019.9:g.2309347_2309357dup, NC_000019.9:g.2309346_2309357dup, NC_000019.9:g.2309345_2309357dup, NC_000019.9:g.2309344_2309357dup, NC_000019.9:g.2309343_2309357dup, NC_000019.9:g.2309357_2309358insTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.2309357_2309358insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.2309357_2309358insTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14913968623.

rs1491396862 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGTTT,GTTT [Show Flanks]
Chromosome:: 19:2309337 (GRCh38)
19:2309337 (GRCh37)
Canonical SPDI:: NC_000019.10:2309337:TTT:TTTGGTTT,NC_000019.10:2309337:TTT:TTTGTTT
Gene:: LINGO3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTGGTTT=0.00042/5 (ALFA)
TTTGG=0.00013/2 (TOMMO)
TTTGG=0.00221/4 (Korea1K)
HGVS:: NC_000019.10:g.2309340_2309341insGGTTT, NC_000019.10:g.2309340_2309341insGTTT, NC_000019.9:g.2309339_2309340insGGTTT, NC_000019.9:g.2309339_2309340insGTTT

Select item 14913607474.

rs1491360747 has merged into rs72496008 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,TTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:2302070 (GRCh38)
19:2302069 (GRCh37)
Canonical SPDI:: NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:2302060:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINGO3 (Varview), LOC101928572 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
T=0.4842/2425 (1000Genomes)
HGVS:: NC_000019.10:g.2302070_2302081del, NC_000019.10:g.2302075_2302081del, NC_000019.10:g.2302078_2302081del, NC_000019.10:g.2302079_2302081del, NC_000019.10:g.2302080_2302081del, NC_000019.10:g.2302081del, NC_000019.10:g.2302081dup, NC_000019.10:g.2302080_2302081dup, NC_000019.10:g.2302079_2302081dup, NC_000019.10:g.2302078_2302081dup, NC_000019.10:g.2302077_2302081dup, NC_000019.9:g.2302069_2302080del, NC_000019.9:g.2302074_2302080del, NC_000019.9:g.2302077_2302080del, NC_000019.9:g.2302078_2302080del, NC_000019.9:g.2302079_2302080del, NC_000019.9:g.2302080del, NC_000019.9:g.2302080dup, NC_000019.9:g.2302079_2302080dup, NC_000019.9:g.2302078_2302080dup, NC_000019.9:g.2302077_2302080dup, NC_000019.9:g.2302076_2302080dup

Select item 14913424175.

rs1491342417 [Homo sapiens]

Variant type:: INS
Alleles:: ->CCT,CG,CGG,CT,CTTT,CTTTT,GGG [Show Flanks]
Chromosome:: 19:2297304 (GRCh38)
19:2297304 (GRCh37)
Canonical SPDI:: NC_000019.10:2297304::CCT,NC_000019.10:2297304::CG,NC_000019.10:2297304::CGG,NC_000019.10:2297304::CT,NC_000019.10:2297304::CTTT,NC_000019.10:2297304::CTTTT,NC_000019.10:2297304::GGG
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGG=0./0 (ALFA)
CT=0.000036/1 (TOMMO)
CCT=0.000181/20 (GnomAD)
HGVS:: NC_000019.10:g.2297304_2297305insCCT, NC_000019.10:g.2297304_2297305insCG, NC_000019.10:g.2297304_2297305insCGG, NC_000019.10:g.2297304_2297305insCT, NC_000019.10:g.2297304_2297305insCTTT, NC_000019.10:g.2297304_2297305insCTTTT, NC_000019.10:g.2297304_2297305insGGG, NC_000019.9:g.2297303_2297304insCCT, NC_000019.9:g.2297303_2297304insCG, NC_000019.9:g.2297303_2297304insCGG, NC_000019.9:g.2297303_2297304insCT, NC_000019.9:g.2297303_2297304insCTTT, NC_000019.9:g.2297303_2297304insCTTTT, NC_000019.9:g.2297303_2297304insGGG

Select item 14912297596.

rs1491229759 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 19:2296240 (GRCh38)
19:2296240 (GRCh37)
Canonical SPDI:: NC_000019.10:2296240:TT:TTT
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
T=0.00003/8 (TOPMED)
HGVS:: NC_000019.10:g.2296242dup, NC_000019.9:g.2296241dup

Select item 14911959487.

rs1491195948 has merged into rs1156254881 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,A,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 19:2292411 (GRCh38)
19:2292410 (GRCh37)
Canonical SPDI:: NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:2292399:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000019.10:g.2292411_2292425del, NC_000019.10:g.2292412_2292425del, NC_000019.10:g.2292414_2292425del, NC_000019.10:g.2292415_2292425del, NC_000019.10:g.2292417_2292425del, NC_000019.10:g.2292418_2292425del, NC_000019.10:g.2292419_2292425del, NC_000019.10:g.2292420_2292425del, NC_000019.10:g.2292421_2292425del, NC_000019.10:g.2292422_2292425del, NC_000019.10:g.2292423_2292425del, NC_000019.10:g.2292424_2292425del, NC_000019.10:g.2292425del, NC_000019.10:g.2292425dup, NC_000019.10:g.2292424_2292425dup, NC_000019.10:g.2292423_2292425dup, NC_000019.10:g.2292422_2292425dup, NC_000019.10:g.2292415_2292425dup, NC_000019.9:g.2292410_2292424del, NC_000019.9:g.2292411_2292424del, NC_000019.9:g.2292413_2292424del, NC_000019.9:g.2292414_2292424del, NC_000019.9:g.2292416_2292424del, NC_000019.9:g.2292417_2292424del, NC_000019.9:g.2292418_2292424del, NC_000019.9:g.2292419_2292424del, NC_000019.9:g.2292420_2292424del, NC_000019.9:g.2292421_2292424del, NC_000019.9:g.2292422_2292424del, NC_000019.9:g.2292423_2292424del, NC_000019.9:g.2292424del, NC_000019.9:g.2292424dup, NC_000019.9:g.2292423_2292424dup, NC_000019.9:g.2292422_2292424dup, NC_000019.9:g.2292421_2292424dup, NC_000019.9:g.2292414_2292424dup

Select item 14911771238.

rs1491177123 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:2292399 (GRCh38)
19:2292398 (GRCh37)
Canonical SPDI:: NC_000019.10:2292398:CA:
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00076/9 (ALFA)
HGVS:: NC_000019.10:g.2292399_2292400del, NC_000019.9:g.2292398_2292399del

Select item 14911347179.

rs1491134717 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:2296240 (GRCh38)
19:2296239 (GRCh37)
Canonical SPDI:: NC_000019.10:2296239:CT:
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.2296240_2296241del, NC_000019.9:g.2296239_2296240del

Select item 149109856710.

rs1491098567 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:2302061 (GRCh38)
19:2302061 (GRCh37)
Canonical SPDI:: NC_000019.10:2302061::G
Gene:: LINGO3 (Varview), LOC101928572 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.2302061_2302062insG, NC_000019.9:g.2302060_2302061insG

Select item 149103723011.

rs1491037230 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:2302062 (GRCh38)
19:2302062 (GRCh37)
Canonical SPDI:: NC_000019.10:2302062::G
Gene:: LINGO3 (Varview), LOC101928572 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.0001/1 (GnomAD)
HGVS:: NC_000019.10:g.2302062_2302063insG, NC_000019.9:g.2302061_2302062insG

Select item 149078622712.

rs1490786227 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:2290660 (GRCh38)
19:2290659 (GRCh37)
Canonical SPDI:: NC_000019.10:2290659:C:G
Gene:: LINGO3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: G=0.000004/1 (GnomAD_exomes)
G=0.000343/1 (KOREAN)
G=0.000531/9 (TOMMO)
HGVS:: NC_000019.10:g.2290660C>G, NC_000019.9:g.2290659C>G, NM_001101391.3:c.1117G>C, NM_001101391.2:c.1117G>C, NM_001101391.1:c.1117G>C, NP_001094861.1:p.Asp373His

Select item 149076259613.

rs1490762596 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:2295035 (GRCh38)
19:2295034 (GRCh37)
Canonical SPDI:: NC_000019.10:2295034:G:A
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000019.10:g.2295035G>A, NC_000019.9:g.2295034G>A

Select item 149075718414.

rs1490757184 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:2296692 (GRCh38)
19:2296691 (GRCh37)
Canonical SPDI:: NC_000019.10:2296691:T:G
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000019.10:g.2296692T>G, NC_000019.9:g.2296691T>G

Select item 149071971015.

rs1490719710 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:2291320 (GRCh38)
19:2291319 (GRCh37)
Canonical SPDI:: NC_000019.10:2291319:G:A
Gene:: LINGO3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000019.10:g.2291320G>A, NC_000019.9:g.2291319G>A, NM_001101391.3:c.457C>T, NM_001101391.2:c.457C>T, NM_001101391.1:c.457C>T, NP_001094861.1:p.Arg153Cys

Select item 149068369316.

rs1490683693 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:2296187 (GRCh38)
19:2296186 (GRCh37)
Canonical SPDI:: NC_000019.10:2296186:G:A
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.2296187G>A, NC_000019.9:g.2296186G>A

Select item 149051647717.

rs1490516477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:2295856 (GRCh38)
19:2295855 (GRCh37)
Canonical SPDI:: NC_000019.10:2295855:G:A,NC_000019.10:2295855:G:C
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.2295856G>A, NC_000019.10:g.2295856G>C, NC_000019.9:g.2295855G>A, NC_000019.9:g.2295855G>C

Select item 149041324618.

rs1490413246 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:2300367 (GRCh38)
19:2300366 (GRCh37)
Canonical SPDI:: NC_000019.10:2300366:T:G
Gene:: LINGO3 (Varview), LOC101928572 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.2300367T>G, NC_000019.9:g.2300366T>G

Select item 149037567519.

rs1490375675 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:2305085 (GRCh38)
19:2305084 (GRCh37)
Canonical SPDI:: NC_000019.10:2305084:G:A
Gene:: LINGO3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.2305085G>A, NC_000019.9:g.2305084G>A

Select item 149021009120.

rs1490210091 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 19:2304389 (GRCh38)
19:2304388 (GRCh37)
Canonical SPDI:: NC_000019.10:2304388:A:C,NC_000019.10:2304388:A:G
Gene:: LINGO3 (Varview), LOC101928572 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
C=0.004673/1 (Vietnamese)
HGVS:: NC_000019.10:g.2304389A>C, NC_000019.10:g.2304389A>G, NC_000019.9:g.2304388A>C, NC_000019.9:g.2304388A>G

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