SNP Links for Gene (Select 643648) - SNP

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Select item 14912724011.

rs1491272401 has merged into rs1173263760 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAAA,AAAAA [Show Flanks]
Chromosome:: 9:62462441 (GRCh38)
9:46773742 (GRCh37)
Canonical SPDI:: NC_000009.12:62462430:AAAAAAAAAAAA:AAAAAAAAAA,NC_000009.12:62462430:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:62462430:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:62462430:AAAAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.01538/8 (NorthernSweden)
HGVS:: NC_000009.12:g.62462441_62462442del, NC_000009.12:g.62462442del, NC_000009.12:g.62462441_62462442dup, NC_000009.12:g.62462440_62462442dup, NC_000009.11:g.46773742_46773743del, NC_000009.11:g.46773743del, NC_000009.11:g.46773742_46773743dup, NC_000009.11:g.46773741_46773743dup

Select item 14911288942.

rs1491128894 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:62462431 (GRCh38)
9:46773733 (GRCh37)
Canonical SPDI:: NC_000009.12:62462431::G
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.22677/2690 (ALFA)
G=0.0052/85 (TOMMO)
G=0.01441/26 (Korea1K)
G=0.03629/3097 (GnomAD)
G=0.04826/25 (NorthernSweden)
HGVS:: NC_000009.12:g.62462431_62462432insG, NC_000009.11:g.46773732_46773733insG

Select item 14907837003.

rs1490783700 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:62519150 (GRCh38)
9:46830451 (GRCh37)
Canonical SPDI:: NC_000009.12:62519149:A:G
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.62519150A>G, NC_000009.11:g.46830451A>G

Select item 14907438284.

rs1490743828 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:62458127 (GRCh38)
9:46769428 (GRCh37)
Canonical SPDI:: NC_000009.12:62458126:A:T
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.62458127A>T, NC_000009.11:g.46769428A>T

Select item 14906679225.

rs1490667922 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:62518682 (GRCh38)
9:46829983 (GRCh37)
Canonical SPDI:: NC_000009.12:62518681:G:T
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/3 (ALFA)
HGVS:: NC_000009.12:g.62518682G>T, NC_000009.11:g.46829983G>T

Select item 14906558316.

rs1490655831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:62452978 (GRCh38)
9:46764279 (GRCh37)
Canonical SPDI:: NC_000009.12:62452977:G:A,NC_000009.12:62452977:G:C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00094/6 (1000Genomes)
G=0.5/4 (SGDP_PRJ)
HGVS:: NC_000009.12:g.62452978G>A, NC_000009.12:g.62452978G>C, NC_000009.11:g.46764279G>A, NC_000009.11:g.46764279G>C

Select item 14906190177.

rs1490619017 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:62518833 (GRCh38)
9:46830134 (GRCh37)
Canonical SPDI:: NC_000009.12:62518832:A:G
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.62518833A>G, NC_000009.11:g.46830134A>G

Select item 14905461308.

rs1490546130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:62458531 (GRCh38)
9:46769832 (GRCh37)
Canonical SPDI:: NC_000009.12:62458530:A:G
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.62458531A>G, NC_000009.11:g.46769832A>G

Select item 14905410789.

rs1490541078 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:62522077 (GRCh38)
9:46833378 (GRCh37)
Canonical SPDI:: NC_000009.12:62522076:C:A,NC_000009.12:62522076:C:T
Gene:: LINC01189 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00031/5 (ALFA)
HGVS:: NC_000009.12:g.62522077C>A, NC_000009.12:g.62522077C>T, NC_000009.11:g.46833378C>A, NC_000009.11:g.46833378C>T

Select item 149053316210.

rs1490533162 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:62469329 (GRCh38)
9:46780630 (GRCh37)
Canonical SPDI:: NC_000009.12:62469328:G:C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.62469329G>C, NC_000009.11:g.46780630G>C

Select item 149047449411.

rs1490474494 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:62452597 (GRCh38)
9:46763898 (GRCh37)
Canonical SPDI:: NC_000009.12:62452596:G:A
Gene:: LINC01189 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.62452597G>A, NC_000009.11:g.46763898G>A, NR_046203.2:n.108G>A

Select item 149045701212.

rs1490457012 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:62464354 (GRCh38)
9:46775655 (GRCh37)
Canonical SPDI:: NC_000009.12:62464353:C:A,NC_000009.12:62464353:C:T
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.0009/14 (TOMMO)
T=0.00113/3 (KOREAN)
HGVS:: NC_000009.12:g.62464354C>A, NC_000009.12:g.62464354C>T, NC_000009.11:g.46775655C>A, NC_000009.11:g.46775655C>T

Select item 149043374713.

rs1490433747 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:62520973 (GRCh38)
9:46832274 (GRCh37)
Canonical SPDI:: NC_000009.12:62520972:T:C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.62520973T>C, NC_000009.11:g.46832274T>C

Select item 149039855514.

rs1490398555 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:62468199 (GRCh38)
9:46779500 (GRCh37)
Canonical SPDI:: NC_000009.12:62468198:T:G
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000036/5 (GnomAD)
HGVS:: NC_000009.12:g.62468199T>G, NC_000009.11:g.46779500T>G

Select item 149038318515.

rs1490383185 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:62451329 (GRCh38)
9:46762630 (GRCh37)
Canonical SPDI:: NC_000009.12:62451328:C:A
Gene:: LINC01189 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00031/2 (1000Genomes)
HGVS:: NC_000009.12:g.62451329C>A, NC_000009.11:g.46762630C>A

Select item 149033094216.

rs1490330942 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 9:62459799 (GRCh38)
9:46771101 (GRCh37)
Canonical SPDI:: NC_000009.12:62459799::C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.62459799_62459800insC, NC_000009.11:g.46771100_46771101insC

Select item 149031769817.

rs1490317698 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:62470266 (GRCh38)
9:46781567 (GRCh37)
Canonical SPDI:: NC_000009.12:62470265:T:C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.62470266T>C, NC_000009.11:g.46781567T>C

Select item 149028564118.

rs1490285641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:62469083 (GRCh38)
9:46780384 (GRCh37)
Canonical SPDI:: NC_000009.12:62469082:C:T
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.62469083C>T, NC_000009.11:g.46780384C>T

Select item 149024281119.

rs1490242811 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:62520956 (GRCh38)
9:46832257 (GRCh37)
Canonical SPDI:: NC_000009.12:62520955:T:C
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.62520956T>C, NC_000009.11:g.46832257T>C

Select item 149017947720.

rs1490179477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:62520988 (GRCh38)
9:46832289 (GRCh37)
Canonical SPDI:: NC_000009.12:62520987:C:A,NC_000009.12:62520987:C:T
Gene:: LINC01189 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000079/8 (GnomAD)
A=0.000217/6 (TOMMO)
HGVS:: NC_000009.12:g.62520988C>A, NC_000009.12:g.62520988C>T, NC_000009.11:g.46832289C>A, NC_000009.11:g.46832289C>T

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