Links from Gene
Items: 1 to 20 of 10505
1.
rs1491568189 has merged into rs398014386 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 10:88722900
(GRCh38)
10:90482657
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88722889:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- LIPK (Varview)
- Functional Consequence:
- intron_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTT=0./0
(
ALFA)
-=0.1/4
(GENOME_DK)
TTTTTTTTTT=0.4471/2239
(1000Genomes)
- HGVS:
NC_000010.11:g.88722900_88722901del, NC_000010.11:g.88722901del, NC_000010.11:g.88722901dup, NC_000010.11:g.88722900_88722901dup, NC_000010.11:g.88722899_88722901dup, NC_000010.11:g.88722898_88722901dup, NC_000010.11:g.88722897_88722901dup, NC_000010.11:g.88722896_88722901dup, NC_000010.11:g.88722895_88722901dup, NC_000010.11:g.88722894_88722901dup, NC_000010.11:g.88722893_88722901dup, NC_000010.11:g.88722892_88722901dup, NC_000010.11:g.88722891_88722901dup, NC_000010.11:g.88722890_88722901dup, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88722901_88722902insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482657_90482658del, NC_000010.10:g.90482658del, NC_000010.10:g.90482658dup, NC_000010.10:g.90482657_90482658dup, NC_000010.10:g.90482656_90482658dup, NC_000010.10:g.90482655_90482658dup, NC_000010.10:g.90482654_90482658dup, NC_000010.10:g.90482653_90482658dup, NC_000010.10:g.90482652_90482658dup, NC_000010.10:g.90482651_90482658dup, NC_000010.10:g.90482650_90482658dup, NC_000010.10:g.90482649_90482658dup, NC_000010.10:g.90482648_90482658dup, NC_000010.10:g.90482647_90482658dup, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90482658_90482659insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3.
rs1491464694 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CTTTTTTTT
[Show Flanks]
- Chromosome:
- 10:88722890
(GRCh38)
10:90482648
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88722890:TTTTTTTT:TTTTTTTTCTTTTTTTT
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TTTTTTTTCTTTTTTTT=0./0
(
ALFA)
- HGVS:
4.
rs1491348982 has merged into rs3068334 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CACACACA>-,CACA,CACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA
[Show Flanks]
- Chromosome:
- 10:88720726
(GRCh38)
10:90480483
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88720715:CACACACACACACACACA:CACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACACACACACA,NC_000010.11:88720715:CACACACACACACACACA:CACACACACACACACACACACACACACACACACA
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
CACACACACACACACA=0./0
(
ALFA)
-=0.1577/790
(1000Genomes)
- HGVS:
NC_000010.11:g.88720716CA[5], NC_000010.11:g.88720716CA[7], NC_000010.11:g.88720716CA[8], NC_000010.11:g.88720716CA[10], NC_000010.11:g.88720716CA[11], NC_000010.11:g.88720716CA[12], NC_000010.11:g.88720716CA[13], NC_000010.11:g.88720716CA[14], NC_000010.11:g.88720716CA[15], NC_000010.11:g.88720716CA[16], NC_000010.11:g.88720716CA[17], NC_000010.10:g.90480473CA[5], NC_000010.10:g.90480473CA[7], NC_000010.10:g.90480473CA[8], NC_000010.10:g.90480473CA[10], NC_000010.10:g.90480473CA[11], NC_000010.10:g.90480473CA[12], NC_000010.10:g.90480473CA[13], NC_000010.10:g.90480473CA[14], NC_000010.10:g.90480473CA[15], NC_000010.10:g.90480473CA[16], NC_000010.10:g.90480473CA[17]
5.
rs1491284149 has merged into rs11374780 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTTT>-,TTTT,TTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 10:88716363
(GRCh38)
10:90476120
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:88716356:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- LIPK (Varview)
- Functional Consequence:
- intron_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.491214/2460
(1000Genomes)
- HGVS:
NC_000010.11:g.88716363_88716375del, NC_000010.11:g.88716367_88716375del, NC_000010.11:g.88716368_88716375del, NC_000010.11:g.88716371_88716375del, NC_000010.11:g.88716372_88716375del, NC_000010.11:g.88716373_88716375del, NC_000010.11:g.88716374_88716375del, NC_000010.11:g.88716375del, NC_000010.11:g.88716375dup, NC_000010.11:g.88716374_88716375dup, NC_000010.11:g.88716373_88716375dup, NC_000010.11:g.88716372_88716375dup, NC_000010.11:g.88716371_88716375dup, NC_000010.11:g.88716370_88716375dup, NC_000010.11:g.88716369_88716375dup, NC_000010.11:g.88716368_88716375dup, NC_000010.11:g.88716366_88716375dup, NC_000010.11:g.88716365_88716375dup, NC_000010.11:g.88716375_88716376insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88716375_88716376insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88716375_88716376insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88716375_88716376insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.11:g.88716375_88716376insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90476120_90476132del, NC_000010.10:g.90476124_90476132del, NC_000010.10:g.90476125_90476132del, NC_000010.10:g.90476128_90476132del, NC_000010.10:g.90476129_90476132del, NC_000010.10:g.90476130_90476132del, NC_000010.10:g.90476131_90476132del, NC_000010.10:g.90476132del, NC_000010.10:g.90476132dup, NC_000010.10:g.90476131_90476132dup, NC_000010.10:g.90476130_90476132dup, NC_000010.10:g.90476129_90476132dup, NC_000010.10:g.90476128_90476132dup, NC_000010.10:g.90476127_90476132dup, NC_000010.10:g.90476126_90476132dup, NC_000010.10:g.90476125_90476132dup, NC_000010.10:g.90476123_90476132dup, NC_000010.10:g.90476122_90476132dup, NC_000010.10:g.90476132_90476133insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90476132_90476133insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90476132_90476133insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90476132_90476133insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000010.10:g.90476132_90476133insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6.
rs1491169828 has merged into rs11300051 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CC>-,C,CCC,CCCC
[Show Flanks]
- Chromosome:
- 10:88740816
(GRCh38)
10:90500573
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88740808:CCCCCCCCC:CCCCCCC,NC_000010.11:88740808:CCCCCCCCC:CCCCCCCC,NC_000010.11:88740808:CCCCCCCCC:CCCCCCCCCC,NC_000010.11:88740808:CCCCCCCCC:CCCCCCCCCCC
- Gene:
- LIPK (Varview)
- Functional Consequence:
- intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
CCCCCCCCCCC=0.0001/1
(
ALFA)
-=0.2/8
(GENOME_DK)
-=0.26/1002
(ALSPAC)
-=0.2824/1047
(TWINSUK)
-=0.2849/1183
(Estonian)
-=0.3138/1531
(1000Genomes)
- HGVS:
7.
rs1491164534 has merged into rs71022537 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GGG>-,G,GG,GGGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGG,GGGGGGGGGG,GGGGGGGGGGG,GGGGGGGGGGGG,GGGGGGGGTGGGGGGGGGGGGGGGG
[Show Flanks]
- Chromosome:
- 10:88729262
(GRCh38)
10:90489019
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGG,NC_000010.11:88729252:GGGGGGGGGGGG:GGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGG
- Gene:
- LIPK (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
GGGGGGGGGGG=0./0
(
ALFA)
-=0.3/12
(GENOME_DK)
- HGVS:
NC_000010.11:g.88729262_88729264del, NC_000010.11:g.88729263_88729264del, NC_000010.11:g.88729264del, NC_000010.11:g.88729264dup, NC_000010.11:g.88729263_88729264dup, NC_000010.11:g.88729262_88729264dup, NC_000010.11:g.88729261_88729264dup, NC_000010.11:g.88729260_88729264dup, NC_000010.11:g.88729259_88729264dup, NC_000010.11:g.88729258_88729264dup, NC_000010.11:g.88729257_88729264dup, NC_000010.11:g.88729256_88729264dup, NC_000010.11:g.88729253_88729264G[17]TGGGGGGGGGGGGGGGG[1], NC_000010.10:g.90489019_90489021del, NC_000010.10:g.90489020_90489021del, NC_000010.10:g.90489021del, NC_000010.10:g.90489021dup, NC_000010.10:g.90489020_90489021dup, NC_000010.10:g.90489019_90489021dup, NC_000010.10:g.90489018_90489021dup, NC_000010.10:g.90489017_90489021dup, NC_000010.10:g.90489016_90489021dup, NC_000010.10:g.90489015_90489021dup, NC_000010.10:g.90489014_90489021dup, NC_000010.10:g.90489013_90489021dup, NC_000010.10:g.90489010_90489021G[17]TGGGGGGGGGGGGGGGG[1]
8.
rs1491043126 has merged into rs111612883 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TT>-,T,TTT,TTTT,TTTTT,TTTTTT
[Show Flanks]
- Chromosome:
- 10:88717891
(GRCh38)
10:90477648
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTT,NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:88717881:TTTTTTTTTTT:TTTTTTTTTTTTTTT
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTT=0./0
(
ALFA)
-=0.04153/154
(TWINSUK)
-=0.04229/163
(ALSPAC)
T=0.35917/139
(1000Genomes)
- HGVS:
NC_000010.11:g.88717891_88717892del, NC_000010.11:g.88717892del, NC_000010.11:g.88717892dup, NC_000010.11:g.88717891_88717892dup, NC_000010.11:g.88717890_88717892dup, NC_000010.11:g.88717889_88717892dup, NC_000010.10:g.90477648_90477649del, NC_000010.10:g.90477649del, NC_000010.10:g.90477649dup, NC_000010.10:g.90477648_90477649dup, NC_000010.10:g.90477647_90477649dup, NC_000010.10:g.90477646_90477649dup
9.
rs1491021914 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->TA
[Show Flanks]
- Chromosome:
- 10:88721131
(GRCh38)
10:90480889
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88721131::TA
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TA=0./0
(
ALFA)
TA=0.000008/2
(TOPMED)
- HGVS:
11.
rs1490912037 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 10:88750228
(GRCh38)
10:90509985
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88750227:T:C
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS:
12.
rs1490792639 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 10:88717766
(GRCh38)
10:90477523
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88717765:C:G
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
13.
rs1490777230 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 10:88717879
(GRCh38)
10:90477636
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88717878:A:T
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000011/3
(TOPMED)
T=0.000015/2
(GnomAD)
- HGVS:
14.
rs1490611033 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 10:88741714
(GRCh38)
10:90501471
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88741713:G:T
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
15.
rs1490559011 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:88727131
(GRCh38)
10:90486888
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88727130:C:T
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000038/10
(TOPMED)
- HGVS:
16.
rs1490532024 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:88726041
(GRCh38)
10:90485798
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88726040:C:T
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
18.
rs1490500446 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 10:88708689
(GRCh38)
10:90468446
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88708688:C:A,NC_000010.11:88708688:C:T
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
T=0.00006/1
(TOMMO)
- HGVS:
19.
rs1490468177 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 10:88750775
(GRCh38)
10:90510532
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88750774:C:G
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
20.
rs1490423578 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 10:88741587
(GRCh38)
10:90501344
(GRCh37)
- Canonical SPDI:
- NC_000010.11:88741586:G:A
- Gene:
- LIPK (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0./0
(GnomAD)
A=0.000004/1
(TOPMED)
- HGVS: