SNP Links for Gene (Select 643365) - SNP

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Select item 14915579691.

rs1491557969 has merged into rs34300741 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTG>-,TG,TGTGTG,TGTGTGTG,TGTGTGTGTG [Show Flanks]
Chromosome:: 13:113896177 (GRCh38)
13:114599150 (GRCh37)
Canonical SPDI:: NC_000013.11:113896162:TGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTG,NC_000013.11:113896162:TGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTG,NC_000013.11:113896162:TGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTG,NC_000013.11:113896162:TGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTG,NC_000013.11:113896162:TGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTG
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGTGTGTGTG=0./0 (ALFA)
TGTGTG=0.000004/1 (TOPMED)
TG=0.225/9 (GENOME_DK)
TG=0.248333/149 (NorthernSweden)
HGVS:: NC_000013.11:g.113896163TG[7], NC_000013.11:g.113896163TG[8], NC_000013.11:g.113896163TG[10], NC_000013.11:g.113896163TG[11], NC_000013.11:g.113896163TG[12], NC_000013.10:g.114599136TG[7], NC_000013.10:g.114599136TG[8], NC_000013.10:g.114599136TG[10], NC_000013.10:g.114599136TG[11], NC_000013.10:g.114599136TG[12]

Select item 14913011832.

rs1491301183 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 13:113920528 (GRCh38)
13:114623502 (GRCh37)
Canonical SPDI:: NC_000013.11:113920528:T:TT
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.113920529dup, NC_000013.10:g.114623502dup

Select item 14912837053.

rs1491283705 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 13:113919944 (GRCh38)
13:114622917 (GRCh37)
Canonical SPDI:: NC_000013.11:113919943:CA:
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000015/2 (GnomAD)
HGVS:: NC_000013.11:g.113919944_113919945del, NC_000013.10:g.114622917_114622918del

Select item 14911422194.

rs1491142219 has merged into rs1352604078 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCACTGAGTGTGCCAG>-,GCACTGAGTGTGCCAGGCACTGAGTGTGCCAG [Show Flanks]
Chromosome:: 13:113919955 (GRCh38)
13:114622928 (GRCh37)
Canonical SPDI:: NC_000013.11:113919944:AGTGTGCCAGGCACTGAGTGTGCCAG:AGTGTGCCAG,NC_000013.11:113919944:AGTGTGCCAGGCACTGAGTGTGCCAG:AGTGTGCCAGGCACTGAGTGTGCCAGGCACTGAGTGTGCCAG
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGTGTGCCAGGCACTGAGTGTGCCAGGCACTGAGTGTGCCAG=0./0 (ALFA)
HGVS:: NC_000013.11:g.113919955_113919970del, NC_000013.11:g.113919955_113919970dup, NC_000013.10:g.114622928_114622943del, NC_000013.10:g.114622928_114622943dup

Select item 14908422755.

rs1490842275 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:113907367 (GRCh38)
13:114610340 (GRCh37)
Canonical SPDI:: NC_000013.11:113907366:C:G
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113907367C>G, NC_000013.10:g.114610340C>G

Select item 14905699706.

rs1490569970 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:113898252 (GRCh38)
13:114601225 (GRCh37)
Canonical SPDI:: NC_000013.11:113898251:C:G
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000013.11:g.113898252C>G, NC_000013.10:g.114601225C>G

Select item 14904862907.

rs1490486290 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 13:113914919 (GRCh38)
13:114617892 (GRCh37)
Canonical SPDI:: NC_000013.11:113914918:CCC:CC
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000013.11:g.113914921del, NC_000013.10:g.114617894del

Select item 14903311228.

rs1490331122 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:113905211 (GRCh38)
13:114608184 (GRCh37)
Canonical SPDI:: NC_000013.11:113905210:A:C
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.113905211A>C, NC_000013.10:g.114608184A>C

Select item 14903000749.

rs1490300074 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 13:113923121 (GRCh38)
13:114626094 (GRCh37)
Canonical SPDI:: NC_000013.11:113923120:AA:A
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.113923122del, NC_000013.10:g.114626095del, NR_024609.1:n.2538del, NM_001039767.1:c.*1446del

Select item 149027664910.

rs1490276649 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:113909701 (GRCh38)
13:114612674 (GRCh37)
Canonical SPDI:: NC_000013.11:113909700:A:G
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113909701A>G, NC_000013.10:g.114612674A>G

Select item 149020539611.

rs1490205396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:113907529 (GRCh38)
13:114610502 (GRCh37)
Canonical SPDI:: NC_000013.11:113907528:G:A
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.113907529G>A, NC_000013.10:g.114610502G>A

Select item 149014835712.

rs1490148357 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:113901743 (GRCh38)
13:114604716 (GRCh37)
Canonical SPDI:: NC_000013.11:113901742:G:T
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000013.11:g.113901743G>T, NC_000013.10:g.114604716G>T

Select item 149002242113.

rs1490022421 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:113916293 (GRCh38)
13:114619266 (GRCh37)
Canonical SPDI:: NC_000013.11:113916292:G:T
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.113916293G>T, NC_000013.10:g.114619266G>T

Select item 148998588714.

rs1489985887 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 13:113924531 (GRCh38)
13:114627504 (GRCh37)
Canonical SPDI:: NC_000013.11:113924527:TCTCT:TCT
Validated:: by frequency,by alfa,by cluster
MAF:: TCT=0.000054/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.00005/7 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.113924529CT[1], NC_000013.10:g.114627502CT[1]

Select item 148976773115.

rs1489767731 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:113906279 (GRCh38)
13:114609252 (GRCh37)
Canonical SPDI:: NC_000013.11:113906278:C:T
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.113906279C>T, NC_000013.10:g.114609252C>T

Select item 148967931816.

rs1489679318 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:113922193 (GRCh38)
13:114625166 (GRCh37)
Canonical SPDI:: NC_000013.11:113922192:C:G,NC_000013.11:113922192:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.113922193C>G, NC_000013.11:g.113922193C>T, NC_000013.10:g.114625166C>G, NC_000013.10:g.114625166C>T, NR_024609.1:n.1609C>G, NR_024609.1:n.1609C>T, NM_001039767.1:c.*517C>G, NM_001039767.1:c.*517C>T

Select item 148960026317.

rs1489600263 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:113893301 (GRCh38)
13:114596274 (GRCh37)
Canonical SPDI:: NC_000013.11:113893300:T:A
Gene:: LINC00452 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.113893301T>A, NC_000013.10:g.114596274T>A

Select item 148956073518.

rs1489560735 has merged into rs34861359 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTT>-,T,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 13:113894599 (GRCh38)
13:114597572 (GRCh37)
Canonical SPDI:: NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:113894589:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC00452 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000013.11:g.113894599_113894613del, NC_000013.11:g.113894600_113894613del, NC_000013.11:g.113894602_113894613del, NC_000013.11:g.113894603_113894613del, NC_000013.11:g.113894605_113894613del, NC_000013.11:g.113894606_113894613del, NC_000013.11:g.113894607_113894613del, NC_000013.11:g.113894608_113894613del, NC_000013.11:g.113894609_113894613del, NC_000013.11:g.113894610_113894613del, NC_000013.11:g.113894611_113894613del, NC_000013.11:g.113894612_113894613del, NC_000013.11:g.113894613del, NC_000013.11:g.113894613dup, NC_000013.11:g.113894612_113894613dup, NC_000013.11:g.113894611_113894613dup, NC_000013.11:g.113894610_113894613dup, NC_000013.11:g.113894609_113894613dup, NC_000013.11:g.113894608_113894613dup, NC_000013.11:g.113894607_113894613dup, NC_000013.11:g.113894606_113894613dup, NC_000013.11:g.113894605_113894613dup, NC_000013.11:g.113894603_113894613dup, NC_000013.11:g.113894602_113894613dup, NC_000013.11:g.113894601_113894613dup, NC_000013.11:g.113894600_113894613dup, NC_000013.11:g.113894599_113894613dup, NC_000013.11:g.113894593_113894613dup, NC_000013.11:g.113894613_113894614insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.10:g.114597572_114597586del, NC_000013.10:g.114597573_114597586del, NC_000013.10:g.114597575_114597586del, NC_000013.10:g.114597576_114597586del, NC_000013.10:g.114597578_114597586del, NC_000013.10:g.114597579_114597586del, NC_000013.10:g.114597580_114597586del, NC_000013.10:g.114597581_114597586del, NC_000013.10:g.114597582_114597586del, NC_000013.10:g.114597583_114597586del, NC_000013.10:g.114597584_114597586del, NC_000013.10:g.114597585_114597586del, NC_000013.10:g.114597586del, NC_000013.10:g.114597586dup, NC_000013.10:g.114597585_114597586dup, NC_000013.10:g.114597584_114597586dup, NC_000013.10:g.114597583_114597586dup, NC_000013.10:g.114597582_114597586dup, NC_000013.10:g.114597581_114597586dup, NC_000013.10:g.114597580_114597586dup, NC_000013.10:g.114597579_114597586dup, NC_000013.10:g.114597578_114597586dup, NC_000013.10:g.114597576_114597586dup, NC_000013.10:g.114597575_114597586dup, NC_000013.10:g.114597574_114597586dup, NC_000013.10:g.114597573_114597586dup, NC_000013.10:g.114597572_114597586dup, NC_000013.10:g.114597566_114597586dup, NC_000013.10:g.114597586_114597587insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 148955396519.

rs1489553965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:113920808 (GRCh38)
13:114623781 (GRCh37)
Canonical SPDI:: NC_000013.11:113920807:C:G
Gene:: LINC00452 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000013.11:g.113920808C>G, NC_000013.10:g.114623781C>G, NR_024609.1:n.949C>G, NM_001039767.1:c.655C>G, NR_164112.1:n.1227C>G, NM_001278674.1:c.619C>G

Select item 148950276620.

rs1489502766 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:113920041 (GRCh38)
13:114623014 (GRCh37)
Canonical SPDI:: NC_000013.11:113920040:A:T
Gene:: LINC00452 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00068/2 (KOREAN)
HGVS:: NC_000013.11:g.113920041A>T, NC_000013.10:g.114623014A>T

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