SNP Links for Gene (Select 643355) - SNP

Links from Gene

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Select item 14907381771.

rs1490738177 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:111991071 (GRCh38)
1:112533693 (GRCh37)
Canonical SPDI:: NC_000001.11:111991070:G:C,NC_000001.11:111991070:G:T
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000052/7 (GnomAD_exomes)
HGVS:: NC_000001.11:g.111991071G>C, NC_000001.11:g.111991071G>T, NC_000001.10:g.112533693G>C, NC_000001.10:g.112533693G>T, NG_032011.2:g.3085C>G, NG_032011.2:g.3085C>A, NR_145438.1:n.536G>C, NR_145438.1:n.536G>T, NM_001270945.1:c.175G>C, NM_001270945.1:c.175G>T

Select item 14907296872.

rs1490729687 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:111996580 (GRCh38)
1:112539202 (GRCh37)
Canonical SPDI:: NC_000001.11:111996579:A:G
Gene:: LINC01750 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.111996580A>G, NC_000001.10:g.112539202A>G, NR_145438.1:n.806A>G, NM_001270945.1:c.*67A>G

Select item 14904923173.

rs1490492317 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111998053 (GRCh38)
1:112540675 (GRCh37)
Canonical SPDI:: NC_000001.11:111998052:C:T
Gene:: LINC01750 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000001.11:g.111998053C>T, NC_000001.10:g.112540675C>T, NR_145438.1:n.2279C>T, NM_001270945.1:c.*1540C>T

Select item 14903105244.

rs1490310524 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111989588 (GRCh38)
1:112532210 (GRCh37)
Canonical SPDI:: NC_000001.11:111989587:G:A
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000015/2 (GnomAD)
HGVS:: NC_000001.11:g.111989588G>A, NC_000001.10:g.112532210G>A, NG_032011.2:g.4568C>T, NM_001378969.1:c.-156C>T, NM_001378970.1:c.-156C>T, XM_011541427.4:c.-156C>T, XM_011541425.4:c.-156C>T, XM_006710632.4:c.-156C>T, XM_011541426.3:c.-156C>T, XM_011541428.3:c.-156C>T

Select item 14899979575.

rs1489997957 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111999100 (GRCh38)
1:112541722 (GRCh37)
Canonical SPDI:: NC_000001.11:111999099:G:A
Gene:: LINC01750 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.111999100G>A, NC_000001.10:g.112541722G>A

Select item 14891392186.

rs1489139218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111990487 (GRCh38)
1:112533109 (GRCh37)
Canonical SPDI:: NC_000001.11:111990486:G:A
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111990487G>A, NC_000001.10:g.112533109G>A, NG_032011.2:g.3669C>T

Select item 14890503487.

rs1489050348 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:111994713 (GRCh38)
1:112537335 (GRCh37)
Canonical SPDI:: NC_000001.11:111994712:C:G
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.111994713C>G, NC_000001.10:g.112537335C>G

Select item 14877558868.

rs1487755886 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:111991197 (GRCh38)
1:112533819 (GRCh37)
Canonical SPDI:: NC_000001.11:111991196:G:A,NC_000001.11:111991196:G:C
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.111991197G>A, NC_000001.11:g.111991197G>C, NC_000001.10:g.112533819G>A, NC_000001.10:g.112533819G>C, NG_032011.2:g.2959C>T, NG_032011.2:g.2959C>G

Select item 14872366009.

rs1487236600 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:111990357 (GRCh38)
1:112532979 (GRCh37)
Canonical SPDI:: NC_000001.11:111990356:G:T
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.111990357G>T, NC_000001.10:g.112532979G>T, NG_032011.2:g.3799C>A

Select item 148706782310.

rs1487067823 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTTA>- [Show Flanks]
Chromosome:: 1:111996115 (GRCh38)
1:112538737 (GRCh37)
Canonical SPDI:: NC_000001.11:111996110:TTTAATTTA:TTTA
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTA=0.000142/2 (ALFA)
-=0.000042/11 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.111996115_111996119del, NC_000001.10:g.112538737_112538741del

Select item 148697397211.

rs1486973972 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:111989908 (GRCh38)
1:112532530 (GRCh37)
Canonical SPDI:: NC_000001.11:111989907:C:A,NC_000001.11:111989907:C:G
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111989908C>A, NC_000001.11:g.111989908C>G, NC_000001.10:g.112532530C>A, NC_000001.10:g.112532530C>G, NG_032011.2:g.4248G>T, NG_032011.2:g.4248G>C

Select item 148675540712.

rs1486755407 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111992644 (GRCh38)
1:112535266 (GRCh37)
Canonical SPDI:: NC_000001.11:111992643:G:A
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.111992644G>A, NC_000001.10:g.112535266G>A, NG_032011.2:g.1512C>T

Select item 148642197013.

rs1486421970 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:111991762 (GRCh38)
1:112534384 (GRCh37)
Canonical SPDI:: NC_000001.11:111991761:C:G
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000001.11:g.111991762C>G, NC_000001.10:g.112534384C>G, NG_032011.2:g.2394G>C

Select item 148589725214.

rs1485897252 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:111989578 (GRCh38)
1:112532200 (GRCh37)
Canonical SPDI:: NC_000001.11:111989577:C:A
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111989578C>A, NC_000001.10:g.112532200C>A, NG_032011.2:g.4578G>T, NM_001378969.1:c.-146G>T, NM_001378970.1:c.-146G>T, XM_011541427.4:c.-146G>T, XM_011541425.4:c.-146G>T, XM_006710632.4:c.-146G>T, XM_011541426.3:c.-146G>T, XM_011541428.3:c.-146G>T

Select item 148522064115.

rs1485220641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:111992166 (GRCh38)
1:112534788 (GRCh37)
Canonical SPDI:: NC_000001.11:111992165:C:G
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.111992166C>G, NC_000001.10:g.112534788C>G, NG_032011.2:g.1990G>C

Select item 148511982816.

rs1485119828 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111993113 (GRCh38)
1:112535735 (GRCh37)
Canonical SPDI:: NC_000001.11:111993112:G:A
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111993113G>A, NC_000001.10:g.112535735G>A, NG_032011.2:g.1043C>T

Select item 148508360917.

rs1485083609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111988149 (GRCh38)
1:112530771 (GRCh37)
Canonical SPDI:: NC_000001.11:111988148:C:T
Gene:: KCND3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.111988149C>T, NC_000001.10:g.112530771C>T, NG_032011.2:g.6007G>A

Select item 148479368118.

rs1484793681 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:111993729 (GRCh38)
1:112536351 (GRCh37)
Canonical SPDI:: NC_000001.11:111993728:C:G
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111993729C>G, NC_000001.10:g.112536351C>G, NG_032011.2:g.427G>C

Select item 148469486819.

rs1484694868 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:111993273 (GRCh38)
1:112535895 (GRCh37)
Canonical SPDI:: NC_000001.11:111993272:T:C
Gene:: LINC01750 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000001.11:g.111993273T>C, NC_000001.10:g.112535895T>C, NG_032011.2:g.883A>G

Select item 148445606120.

rs1484456061 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111989087 (GRCh38)
1:112531709 (GRCh37)
Canonical SPDI:: NC_000001.11:111989086:C:T
Gene:: KCND3 (Varview), LINC01750 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.111989087C>T, NC_000001.10:g.112531709C>T, NG_032011.2:g.5069G>A, NM_004980.5:c.-412G>A, NM_004980.4:c.-412G>A, NM_172198.3:c.-412G>A, NM_172198.2:c.-412G>A, XM_006710629.5:c.-224G>A, XM_006710629.4:c.-224G>A, XM_006710629.3:c.-224G>A, XM_006710629.2:c.-224G>A, XM_006710629.1:c.-224G>A, XM_017001244.3:c.-239G>A, XM_017001244.2:c.-239G>A, XM_017001244.1:c.-239G>A, XM_017001245.3:c.-224G>A, XM_017001245.2:c.-224G>A, XM_017001245.1:c.-224G>A

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