SNP Links for Gene (Select 642852) - SNP

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Select item 14908204851.

rs1490820485 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 21:45289920 (GRCh38)
21:46709835 (GRCh37)
Canonical SPDI:: NC_000021.9:45289919:A:C
Gene:: LINC00205 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000021.9:g.45289920A>C, NC_000021.8:g.46709835A>C

Select item 14907389352.

rs1490738935 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45292768 (GRCh38)
21:46712683 (GRCh37)
Canonical SPDI:: NC_000021.9:45292767:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000021.9:g.45292768G>A, NC_000021.8:g.46712683G>A, NR_026943.1:n.2579G>A

Select item 14906832493.

rs1490683249 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 21:45288079 (GRCh38)
21:46707994 (GRCh37)
Canonical SPDI:: NC_000021.9:45288078:T:A
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000021.9:g.45288079T>A, NC_000021.8:g.46707994T>A, NR_026943.1:n.28T>A

Select item 14904460224.

rs1490446022 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 21:45286947 (GRCh38)
21:46706862 (GRCh37)
Canonical SPDI:: NC_000021.9:45286946:C:G
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00006/16 (TOPMED)
HGVS:: NC_000021.9:g.45286947C>G, NC_000021.8:g.46706862C>G

Select item 14903941355.

rs1490394135 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 21:45286070 (GRCh38)
21:46705985 (GRCh37)
Canonical SPDI:: NC_000021.9:45286069:G:C
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.45286070G>C, NC_000021.8:g.46705985G>C

Select item 14903336556.

rs1490333655 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:45288914 (GRCh38)
21:46708829 (GRCh37)
Canonical SPDI:: NC_000021.9:45288913:A:G
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000021.9:g.45288914A>G, NC_000021.8:g.46708829A>G

Select item 14902420467.

rs1490242046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 21:45287666 (GRCh38)
21:46707581 (GRCh37)
Canonical SPDI:: NC_000021.9:45287665:G:C
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.08894/1055 (ALFA)
C=0.00921/149 (TOMMO)
C=0.15959/451 (KOREAN)
G=0.5/2 (SGDP_PRJ)
HGVS:: NC_000021.9:g.45287666G>C, NC_000021.8:g.46707581G>C

Select item 14901915058.

rs1490191505 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 21:45291799 (GRCh38)
21:46711714 (GRCh37)
Canonical SPDI:: NC_000021.9:45291798:C:G
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.45291799C>G, NC_000021.8:g.46711714C>G, NR_026943.1:n.1610C>G

Select item 14899937459.

rs1489993745 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 21:45297617 (GRCh38)
21:46717532 (GRCh37)
Canonical SPDI:: NC_000021.9:45297616:G:T
Gene:: LINC00205 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.45297617G>T, NC_000021.8:g.46717532G>T

Select item 148996342610.

rs1489963426 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45296728 (GRCh38)
21:46716643 (GRCh37)
Canonical SPDI:: NC_000021.9:45296727:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.45296728G>A, NC_000021.8:g.46716643G>A, NR_026943.1:n.6539G>A

Select item 148965804311.

rs1489658043 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 21:45290617 (GRCh38)
21:46710533 (GRCh37)
Canonical SPDI:: NC_000021.9:45290617:AAAAAA:AAAAAAA
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000008/1 (GnomAD)
HGVS:: NC_000021.9:g.45290623dup, NC_000021.8:g.46710538dup, NR_026943.1:n.434dup

Select item 148915545912.

rs1489155459 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:45296231 (GRCh38)
21:46716146 (GRCh37)
Canonical SPDI:: NC_000021.9:45296230:C:T
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.45296231C>T, NC_000021.8:g.46716146C>T, NR_026943.1:n.6042C>T, NM_153454.1:c.-229G>A

Select item 148897379613.

rs1488973796 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45290592 (GRCh38)
21:46710507 (GRCh37)
Canonical SPDI:: NC_000021.9:45290591:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000021.9:g.45290592G>A, NC_000021.8:g.46710507G>A, NR_026943.1:n.403G>A

Select item 148874299514.

rs1488742995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45287624 (GRCh38)
21:46707539 (GRCh37)
Canonical SPDI:: NC_000021.9:45287623:G:A
Gene:: POFUT2 (Varview), LINC00205 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000021.9:g.45287624G>A, NC_000021.8:g.46707539G>A

Select item 148847319815.

rs1488473198 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45293968 (GRCh38)
21:46713883 (GRCh37)
Canonical SPDI:: NC_000021.9:45293967:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.45293968G>A, NC_000021.8:g.46713883G>A, NR_026943.1:n.3779G>A

Select item 148833682116.

rs1488336821 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45293168 (GRCh38)
21:46713083 (GRCh37)
Canonical SPDI:: NC_000021.9:45293167:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.45293168G>A, NC_000021.8:g.46713083G>A, NR_026943.1:n.2979G>A

Select item 148817753017.

rs1488177530 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45295812 (GRCh38)
21:46715727 (GRCh37)
Canonical SPDI:: NC_000021.9:45295811:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000064/17 (TOPMED)
HGVS:: NC_000021.9:g.45295812G>A, NC_000021.8:g.46715727G>A, NR_026943.1:n.5623G>A

Select item 148814731318.

rs1488147313 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:45296814 (GRCh38)
21:46716729 (GRCh37)
Canonical SPDI:: NC_000021.9:45296813:G:A
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000021.9:g.45296814G>A, NC_000021.8:g.46716729G>A, NR_026943.1:n.6625G>A

Select item 148761628819.

rs1487616288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 21:45289949 (GRCh38)
21:46709864 (GRCh37)
Canonical SPDI:: NC_000021.9:45289948:C:A,NC_000021.9:45289948:C:G
Gene:: LINC00205 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.45289949C>A, NC_000021.9:g.45289949C>G, NC_000021.8:g.46709864C>A, NC_000021.8:g.46709864C>G

Select item 148743499220.

rs1487434992 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:45297005 (GRCh38)
21:46716920 (GRCh37)
Canonical SPDI:: NC_000021.9:45297004:A:G
Gene:: LINC00205 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000021.9:g.45297005A>G, NC_000021.8:g.46716920A>G, NR_026943.1:n.6816A>G

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