SNP Links for Gene (Select 642361) - SNP

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Select item 14912825541.

rs1491282554 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 10:79827796 (GRCh38)
10:81587553 (GRCh37)
Canonical SPDI:: NC_000010.11:79827796::G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00008/1 (ALFA)
G=0.0055/11 (GnomAD)
HGVS:: NC_000010.11:g.79827796_79827797insG, NC_000010.10:g.81587552_81587553insG

Select item 14909236882.

rs1490923688 has merged into rs56740272 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,TTT,TTTTT,TTTTTTT [Show Flanks]
Chromosome:: 10:79827732 (GRCh38)
10:81587488 (GRCh37)
Canonical SPDI:: NC_000010.11:79827725:TTTTTTTTTT:TTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTTTTTT
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
T=0.000212/4 (TOMMO)
T=0.001638/3 (Korea1K)
HGVS:: NC_000010.11:g.79827732_79827735del, NC_000010.11:g.79827735del, NC_000010.11:g.79827735dup, NC_000010.11:g.79827733_79827735dup, NC_000010.10:g.81587488_81587491del, NC_000010.10:g.81587491del, NC_000010.10:g.81587491dup, NC_000010.10:g.81587489_81587491dup

Select item 14897625083.

rs1489762508 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATTT>- [Show Flanks]
Chromosome:: 10:79827366 (GRCh38)
10:81587122 (GRCh37)
Canonical SPDI:: NC_000010.11:79827360:AATTTAATTT:AATTT
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AATTTAATTT=0.000084/1 (ALFA)
-=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.79827361AATTT[1], NC_000010.10:g.81587117AATTT[1], NR_029407.1:n.1460AATTT[1]

Select item 14891548054.

rs1489154805 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:79826864 (GRCh38)
10:81586620 (GRCh37)
Canonical SPDI:: NC_000010.11:79826863:C:A
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.79826864C>A, NC_000010.10:g.81586620C>A, NM_001355263.2:c.-3221C>A, NR_029407.1:n.963C>A

Select item 14888263665.

rs1488826366 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:79826731 (GRCh38)
10:81586487 (GRCh37)
Canonical SPDI:: NC_000010.11:79826730:A:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.79826731A>G, NC_000010.10:g.81586487A>G, NR_029407.1:n.830A>G

Select item 14885733606.

rs1488573360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:79826908 (GRCh38)
10:81586664 (GRCh37)
Canonical SPDI:: NC_000010.11:79826907:G:C
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000010.11:g.79826908G>C, NC_000010.10:g.81586664G>C, NM_001355263.2:c.-3177G>C, NR_029407.1:n.1007G>C

Select item 14884370117.

rs1488437011 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:79826514 (GRCh38)
10:81586270 (GRCh37)
Canonical SPDI:: NC_000010.11:79826513:A:C
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.79826514A>C, NC_000010.10:g.81586270A>C, NR_120611.1:n.81T>G, NR_029407.1:n.613A>C, NR_120613.1:n.81T>G, NR_120612.1:n.81T>G

Select item 14882058218.

rs1488205821 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:79825813 (GRCh38)
10:81585569 (GRCh37)
Canonical SPDI:: NC_000010.11:79825812:C:A
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000010.11:g.79825813C>A, NC_000010.10:g.81585569C>A

Select item 14881757999.

rs1488175799 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:79826337 (GRCh38)
10:81586093 (GRCh37)
Canonical SPDI:: NC_000010.11:79826336:G:C
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.79826337G>C, NC_000010.10:g.81586093G>C, NR_120611.1:n.258C>G, NR_029407.1:n.436G>C, NR_120613.1:n.258C>G, NR_120612.1:n.258C>G

Select item 148683290210.

rs1486832902 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:79827508 (GRCh38)
10:81587264 (GRCh37)
Canonical SPDI:: NC_000010.11:79827507:A:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.79827508A>G, NC_000010.10:g.81587264A>G, NR_029407.1:n.1607A>G

Select item 148667452911.

rs1486674529 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:79825434 (GRCh38)
10:81585190 (GRCh37)
Canonical SPDI:: NC_000010.11:79825433:G:T
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.79825434G>T, NC_000010.10:g.81585190G>T

Select item 148660962912.

rs1486609629 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 10:79825770 (GRCh38)
10:81585526 (GRCh37)
Canonical SPDI:: NC_000010.11:79825769:GGGGG:GGGG
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000047/5 (GnomAD)
HGVS:: NC_000010.11:g.79825774del, NC_000010.10:g.81585530del

Select item 148619093613.

rs1486190936 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:79825652 (GRCh38)
10:81585408 (GRCh37)
Canonical SPDI:: NC_000010.11:79825651:A:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.79825652A>G, NC_000010.10:g.81585408A>G

Select item 148563066614.

rs1485630666 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:79826355 (GRCh38)
10:81586111 (GRCh37)
Canonical SPDI:: NC_000010.11:79826354:A:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000015/2 (GnomAD)
HGVS:: NC_000010.11:g.79826355A>G, NC_000010.10:g.81586111A>G, NR_120611.1:n.240T>C, NR_029407.1:n.454A>G, NR_120613.1:n.240T>C, NR_120612.1:n.240T>C

Select item 148545525315.

rs1485455253 has merged into rs56740272 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,TTT,TTTTT,TTTTTTT [Show Flanks]
Chromosome:: 10:79827732 (GRCh38)
10:81587488 (GRCh37)
Canonical SPDI:: NC_000010.11:79827725:TTTTTTTTTT:TTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:79827725:TTTTTTTTTT:TTTTTTTTTTTTT
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
T=0.000212/4 (TOMMO)
T=0.001638/3 (Korea1K)
HGVS:: NC_000010.11:g.79827732_79827735del, NC_000010.11:g.79827735del, NC_000010.11:g.79827735dup, NC_000010.11:g.79827733_79827735dup, NC_000010.10:g.81587488_81587491del, NC_000010.10:g.81587491del, NC_000010.10:g.81587491dup, NC_000010.10:g.81587489_81587491dup

Select item 148535415816.

rs1485354158 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:79825060 (GRCh38)
10:81584816 (GRCh37)
Canonical SPDI:: NC_000010.11:79825059:C:A
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000036/5 (GnomAD)
HGVS:: NC_000010.11:g.79825060C>A, NC_000010.10:g.81584816C>A

Select item 148503111117.

rs1485031111 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:79824841 (GRCh38)
10:81584597 (GRCh37)
Canonical SPDI:: NC_000010.11:79824840:T:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.79824841T>G, NC_000010.10:g.81584597T>G

Select item 148467008518.

rs1484670085 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 10:79826497 (GRCh38)
10:81586253 (GRCh37)
Canonical SPDI:: NC_000010.11:79826496:T:C,NC_000010.11:79826496:T:G
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
G=0.000156/1 (1000Genomes)
G=0.001125/2 (Korea1K)
G=0.001714/5 (KOREAN)
HGVS:: NC_000010.11:g.79826497T>C, NC_000010.11:g.79826497T>G, NC_000010.10:g.81586253T>C, NC_000010.10:g.81586253T>G, NR_120611.1:n.98A>G, NR_120611.1:n.98A>C, NR_029407.1:n.596T>C, NR_029407.1:n.596T>G, NR_120613.1:n.98A>G, NR_120613.1:n.98A>C, NR_120612.1:n.98A>G, NR_120612.1:n.98A>C

Select item 148376657719.

rs1483766577 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:79824428 (GRCh38)
10:81584184 (GRCh37)
Canonical SPDI:: NC_000010.11:79824427:G:A
Gene:: LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.79824428G>A, NC_000010.10:g.81584184G>A

Select item 148374333820.

rs1483743338 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:79826361 (GRCh38)
10:81586117 (GRCh37)
Canonical SPDI:: NC_000010.11:79826360:G:A
Gene:: NUTM2E (Varview), LOC642361 (Varview), NUTM2B-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000052/7 (GnomAD)
HGVS:: NC_000010.11:g.79826361G>A, NC_000010.10:g.81586117G>A, NR_120611.1:n.234C>T, NR_029407.1:n.460G>A, NR_120613.1:n.234C>T, NR_120612.1:n.234C>T