SNP Links for Gene (Select 6376) - SNP

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Select item 14913241631.

rs1491324163 has merged into rs386384798 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 16:57370670 (GRCh38)
16:57404582 (GRCh37)
Canonical SPDI:: NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:57370660:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: CX3CL1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000016.10:g.57370670_57370679del, NC_000016.10:g.57370672_57370679del, NC_000016.10:g.57370674_57370679del, NC_000016.10:g.57370675_57370679del, NC_000016.10:g.57370676_57370679del, NC_000016.10:g.57370677_57370679del, NC_000016.10:g.57370678_57370679del, NC_000016.10:g.57370679del, NC_000016.10:g.57370679dup, NC_000016.10:g.57370678_57370679dup, NC_000016.10:g.57370677_57370679dup, NC_000016.10:g.57370676_57370679dup, NC_000016.10:g.57370675_57370679dup, NC_000016.10:g.57370674_57370679dup, NC_000016.10:g.57370673_57370679dup, NC_000016.10:g.57370672_57370679dup, NC_000016.10:g.57370664_57370679dup, NC_000016.9:g.57404582_57404591del, NC_000016.9:g.57404584_57404591del, NC_000016.9:g.57404586_57404591del, NC_000016.9:g.57404587_57404591del, NC_000016.9:g.57404588_57404591del, NC_000016.9:g.57404589_57404591del, NC_000016.9:g.57404590_57404591del, NC_000016.9:g.57404591del, NC_000016.9:g.57404591dup, NC_000016.9:g.57404590_57404591dup, NC_000016.9:g.57404589_57404591dup, NC_000016.9:g.57404588_57404591dup, NC_000016.9:g.57404587_57404591dup, NC_000016.9:g.57404586_57404591dup, NC_000016.9:g.57404585_57404591dup, NC_000016.9:g.57404584_57404591dup, NC_000016.9:g.57404576_57404591dup

Select item 14912567632.

rs1491256763 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 16:57378470 (GRCh38)
16:57412383 (GRCh37)
Canonical SPDI:: NC_000016.10:57378470:C:CC
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.57378471dup, NC_000016.9:g.57412383dup

Select item 14910982963.

rs1491098296 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 16:57378471 (GRCh38)
16:57412383 (GRCh37)
Canonical SPDI:: NC_000016.10:57378469:TCT:T
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.57378471_57378472del, NC_000016.9:g.57412383_57412384del

Select item 14910954384.

rs1491095438 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTT [Show Flanks]
Chromosome:: 16:57370661 (GRCh38)
16:57404574 (GRCh37)
Canonical SPDI:: NC_000016.10:57370661:TTT:TTTCTTT
Gene:: CX3CL1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTCTTT=0.000084/1 (ALFA)
TTTC=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.57370664_57370665insCTTT, NC_000016.9:g.57404576_57404577insCTTT

Select item 14910428015.

rs1491042801 has merged into rs538580586 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:57375153 (GRCh38)
16:57409065 (GRCh37)
Canonical SPDI:: NC_000016.10:57375151:AGA:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00059/7 (ALFA)
-=0.00016/3 (TOMMO)
-=0.00253/122 (GnomAD)
-=0.02412/44 (Korea1K)
HGVS:: NC_000016.10:g.57375153_57375154del, NC_000016.9:g.57409065_57409066del

Select item 14909547646.

rs1490954764 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:57382172 (GRCh38)
16:57416084 (GRCh37)
Canonical SPDI:: NC_000016.10:57382171:C:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.57382172C>A, NC_000016.9:g.57416084C>A, NM_002996.6:c.334C>A, NM_002996.5:c.334C>A, NM_002996.4:c.334C>A, NM_002996.3:c.334C>A, NM_001304392.3:c.79C>A, NM_001304392.2:c.79C>A, NM_001304392.1:c.79C>A, NP_002987.1:p.Pro112Thr, NP_001291321.1:p.Pro27Thr

Select item 14908462727.

rs1490846272 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57383113 (GRCh38)
16:57417025 (GRCh37)
Canonical SPDI:: NC_000016.10:57383112:G:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.57383113G>A, NC_000016.9:g.57417025G>A, NM_002996.6:c.*81G>A, NM_002996.5:c.*81G>A, NM_002996.4:c.*81G>A, NM_002996.3:c.*81G>A, NM_001304392.3:c.*81G>A, NM_001304392.2:c.*81G>A, NM_001304392.1:c.*81G>A

Select item 14906637748.

rs1490663774 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:57374697 (GRCh38)
16:57408609 (GRCh37)
Canonical SPDI:: NC_000016.10:57374696:C:G
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.57374697C>G, NC_000016.9:g.57408609C>G

Select item 14901642529.

rs1490164252 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57374374 (GRCh38)
16:57408286 (GRCh37)
Canonical SPDI:: NC_000016.10:57374373:C:T
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.57374374C>T, NC_000016.9:g.57408286C>T

Select item 149002956610.

rs1490029566 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 16:57383558 (GRCh38)
16:57417470 (GRCh37)
Canonical SPDI:: NC_000016.10:57383557:TT:T
Gene:: CX3CL1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.57383559del, NC_000016.9:g.57417471del, NM_002996.6:c.*527del, NM_002996.5:c.*527del, NM_002996.4:c.*527del, NM_002996.3:c.*527del, NM_001304392.3:c.*527del, NM_001304392.2:c.*527del, NM_001304392.1:c.*527del

Select item 148981960311.

rs1489819603 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57376238 (GRCh38)
16:57410150 (GRCh37)
Canonical SPDI:: NC_000016.10:57376237:C:T
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.57376238C>T, NC_000016.9:g.57410150C>T

Select item 148974546112.

rs1489745461 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57377057 (GRCh38)
16:57410969 (GRCh37)
Canonical SPDI:: NC_000016.10:57377056:G:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.57377057G>A, NC_000016.9:g.57410969G>A

Select item 148961159013.

rs1489611590 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57379146 (GRCh38)
16:57413058 (GRCh37)
Canonical SPDI:: NC_000016.10:57379145:G:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.57379146G>A, NC_000016.9:g.57413058G>A

Select item 148957875114.

rs1489578751 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAGA>- [Show Flanks]
Chromosome:: 16:57376771 (GRCh38)
16:57410683 (GRCh37)
Canonical SPDI:: NC_000016.10:57376769:AAAGA:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.57376771_57376774del, NC_000016.9:g.57410683_57410686del

Select item 148953418015.

rs1489534180 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57376515 (GRCh38)
16:57410427 (GRCh37)
Canonical SPDI:: NC_000016.10:57376514:G:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.01163/138 (ALFA)
A=0.01745/51 (KOREAN)
G=0.5/7 (SGDP_PRJ)
HGVS:: NC_000016.10:g.57376515G>A, NC_000016.9:g.57410427G>A

Select item 148933769416.

rs1489337694 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:57376357 (GRCh38)
16:57410269 (GRCh37)
Canonical SPDI:: NC_000016.10:57376356:G:C
Gene:: CX3CL1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.57376357G>C, NC_000016.9:g.57410269G>C

Select item 148932661017.

rs1489326610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57384636 (GRCh38)
16:57418548 (GRCh37)
Canonical SPDI:: NC_000016.10:57384635:G:A
Gene:: CX3CL1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.57384636G>A, NC_000016.9:g.57418548G>A, NM_002996.6:c.*1604G>A, NM_002996.5:c.*1604G>A, NM_002996.4:c.*1604G>A, NM_002996.3:c.*1604G>A, NM_001304392.3:c.*1604G>A, NM_001304392.2:c.*1604G>A, NM_001304392.1:c.*1604G>A

Select item 148921767718.

rs1489217677 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:57370657 (GRCh38)
16:57404569 (GRCh37)
Canonical SPDI:: NC_000016.10:57370656:T:C,NC_000016.10:57370656:T:G
Gene:: CX3CL1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000057/15 (TOPMED)
HGVS:: NC_000016.10:g.57370657T>C, NC_000016.10:g.57370657T>G, NC_000016.9:g.57404569T>C, NC_000016.9:g.57404569T>G

Select item 148916492019.

rs1489164920 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:57385266 (GRCh38)
16:57419178 (GRCh37)
Canonical SPDI:: NC_000016.10:57385265:T:C
Gene:: CX3CL1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000214/3 (ALFA)
C=0.000312/2 (1000Genomes)
C=0.000378/100 (TOPMED)
C=0.000378/53 (GnomAD)
HGVS:: NC_000016.10:g.57385266T>C, NC_000016.9:g.57419178T>C

Select item 148891271820.

rs1488912718 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57385408 (GRCh38)
16:57419320 (GRCh37)
Canonical SPDI:: NC_000016.10:57385407:C:T
Gene:: CX3CL1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.57385408C>T, NC_000016.9:g.57419320C>T

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