SNP Links for Gene (Select 6374) - SNP

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Select item 14902424721.

rs1490242472 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:73996099 (GRCh38)
4:74861816 (GRCh37)
Canonical SPDI:: NC_000004.12:73996098:A:C
Gene:: CXCL5 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.73996099A>C, NC_000004.11:g.74861816A>C, NM_002994.5:c.*1538T>G, NM_002994.4:c.*1538T>G

Select item 14895314442.

rs1489531444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:73997535 (GRCh38)
4:74863252 (GRCh37)
Canonical SPDI:: NC_000004.12:73997534:C:T
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.73997535C>T, NC_000004.11:g.74863252C>T, NM_002994.5:c.*102G>A, NM_002994.4:c.*102G>A

Select item 14892582863.

rs1489258286 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:74000352 (GRCh38)
4:74866069 (GRCh37)
Canonical SPDI:: NC_000004.12:74000351:T:C
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.74000352T>C, NC_000004.11:g.74866069T>C

Select item 14891652134.

rs1489165213 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:73999298 (GRCh38)
4:74865015 (GRCh37)
Canonical SPDI:: NC_000004.12:73999297:C:T
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73999298C>T, NC_000004.11:g.74865015C>T, XR_007058140.1:n.1071C>T

Select item 14890438265.

rs1489043826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:73996259 (GRCh38)
4:74861976 (GRCh37)
Canonical SPDI:: NC_000004.12:73996258:A:G
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73996259A>G, NC_000004.11:g.74861976A>G, NM_002994.5:c.*1378T>C, NM_002994.4:c.*1378T>C

Select item 14890347306.

rs1489034730 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:73995853 (GRCh38)
4:74861570 (GRCh37)
Canonical SPDI:: NC_000004.12:73995852:A:G
Gene:: CXCL5 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000015/2 (GnomAD)
HGVS:: NC_000004.12:g.73995853A>G, NC_000004.11:g.74861570A>G, NM_002994.5:c.*1784T>C, NM_002994.4:c.*1784T>C

Select item 14888479767.

rs1488847976 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:73999974 (GRCh38)
4:74865691 (GRCh37)
Canonical SPDI:: NC_000004.12:73999973:C:A
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.73999974C>A, NC_000004.11:g.74865691C>A

Select item 14883974258.

rs1488397425 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 4:73997180 (GRCh38)
4:74862897 (GRCh37)
Canonical SPDI:: NC_000004.12:73997179:G:T
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.73997180G>T, NC_000004.11:g.74862897G>T, NM_002994.5:c.*457C>A, NM_002994.4:c.*457C>A

Select item 14880527109.

rs1488052710 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAA>- [Show Flanks]
Chromosome:: 4:73996963 (GRCh38)
4:74862680 (GRCh37)
Canonical SPDI:: NC_000004.12:73996960:AAAGAA:AA
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.73996963_73996966del, NC_000004.11:g.74862680_74862683del, NM_002994.5:c.*673_*676del, NM_002994.4:c.*673_*676del

Select item 148756837010.

rs1487568370 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:73999617 (GRCh38)
4:74865334 (GRCh37)
Canonical SPDI:: NC_000004.12:73999616:A:T
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000004.12:g.73999617A>T, NC_000004.11:g.74865334A>T

Select item 148712372011.

rs1487123720 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:73999443 (GRCh38)
4:74865160 (GRCh37)
Canonical SPDI:: NC_000004.12:73999442:C:A
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73999443C>A, NC_000004.11:g.74865160C>A

Select item 148680515712.

rs1486805157 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:74000485 (GRCh38)
4:74866202 (GRCh37)
Canonical SPDI:: NC_000004.12:74000484:T:C
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000004.12:g.74000485T>C, NC_000004.11:g.74866202T>C

Select item 148614312913.

rs1486143129 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:73996862 (GRCh38)
4:74862579 (GRCh37)
Canonical SPDI:: NC_000004.12:73996861:G:C
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73996862G>C, NC_000004.11:g.74862579G>C, NM_002994.5:c.*775C>G, NM_002994.4:c.*775C>G

Select item 148574699914.

rs1485746999 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:73996540 (GRCh38)
4:74862257 (GRCh37)
Canonical SPDI:: NC_000004.12:73996539:A:G
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73996540A>G, NC_000004.11:g.74862257A>G, NM_002994.5:c.*1097T>C, NM_002994.4:c.*1097T>C

Select item 148524620115.

rs1485246201 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:73999522 (GRCh38)
4:74865239 (GRCh37)
Canonical SPDI:: NC_000004.12:73999521:T:G
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000342/1 (KOREAN)
HGVS:: NC_000004.12:g.73999522T>G, NC_000004.11:g.74865239T>G

Select item 148512286716.

rs1485122867 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 4:73995568 (GRCh38)
4:74861285 (GRCh37)
Canonical SPDI:: NC_000004.12:73995567:A:
Gene:: CXCL5 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.73995568del, NC_000004.11:g.74861285del

Select item 148315084917.

rs1483150849 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:73997948 (GRCh38)
4:74863665 (GRCh37)
Canonical SPDI:: NC_000004.12:73997947:C:G
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.73997948C>G, NC_000004.11:g.74863665C>G

Select item 148218352518.

rs1482183525 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 4:73997025 (GRCh38)
4:74862742 (GRCh37)
Canonical SPDI:: NC_000004.12:73997024:TT:T
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000034/9 (TOPMED)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000004.12:g.73997026del, NC_000004.11:g.74862743del, NM_002994.5:c.*612del, NM_002994.4:c.*612del

Select item 147982958719.

rs1479829587 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:73999129 (GRCh38)
4:74864846 (GRCh37)
Canonical SPDI:: NC_000004.12:73999128:T:C
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.73999129T>C, NC_000004.11:g.74864846T>C, XR_007058140.1:n.902T>C

Select item 147951828520.

rs1479518285 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:73996992 (GRCh38)
4:74862709 (GRCh37)
Canonical SPDI:: NC_000004.12:73996991:T:C
Gene:: CXCL5 (Varview), LOC124900715 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.73996992T>C, NC_000004.11:g.74862709T>C, NM_002994.5:c.*645A>G, NM_002994.4:c.*645A>G

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