SNP Links for Gene (Select 613206) - SNP

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Links from Gene

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Select item 14888095851.

rs1488809585 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:124258272 (GRCh38)
9:127020551 (GRCh37)
Canonical SPDI:: NC_000009.12:124258271:G:A,NC_000009.12:124258271:G:C
Gene:: NEK6 (Varview)
Functional Consequence:: 5_prime_UTR_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.124258272G>A, NC_000009.12:g.124258272G>C, NC_000009.11:g.127020551G>A, NC_000009.11:g.127020551G>C, XM_024447387.2:c.-197G>A, XM_024447387.2:c.-197G>C, NM_001166168.2:c.-119G>A, NM_001166168.2:c.-119G>C, NM_001166168.1:c.-119G>A, NM_001166168.1:c.-119G>C, XR_007061234.1:n.32G>A, XR_007061234.1:n.32G>C, XR_007061237.1:n.32G>A, XR_007061237.1:n.32G>C, XM_047422652.1:c.-362G>A, XM_047422652.1:c.-362G>C

Select item 14881725862.

rs1488172586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 9:124258209 (GRCh38)
9:127020488 (GRCh37)
Canonical SPDI:: NC_000009.12:124258208:G:A,NC_000009.12:124258208:G:C,NC_000009.12:124258208:G:T
Gene:: NEK6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.00103/17 (TOMMO)
T=0.00291/7 (KOREAN)
HGVS:: NC_000009.12:g.124258209G>A, NC_000009.12:g.124258209G>C, NC_000009.12:g.124258209G>T, NC_000009.11:g.127020488G>A, NC_000009.11:g.127020488G>C, NC_000009.11:g.127020488G>T

Select item 14880689373.

rs1488068937 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:124260970 (GRCh38)
9:127023249 (GRCh37)
Canonical SPDI:: NC_000009.12:124260969:T:A
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.124260970T>A, NC_000009.11:g.127023249T>A, NM_001033016.1:c.100A>T

Select item 14876033294.

rs1487603329 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:124258153 (GRCh38)
9:127020432 (GRCh37)
Canonical SPDI:: NC_000009.12:124258152:G:A,NC_000009.12:124258152:G:T
Gene:: NEK6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124258153G>A, NC_000009.12:g.124258153G>T, NC_000009.11:g.127020432G>A, NC_000009.11:g.127020432G>T

Select item 14871760785.

rs1487176078 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:124258601 (GRCh38)
9:127020880 (GRCh37)
Canonical SPDI:: NC_000009.12:124258600:T:G
Gene:: NEK6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124258601T>G, NC_000009.11:g.127020880T>G, NM_001033016.1:c.*963A>C

Select item 14870844486.

rs1487084448 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 14868065987.

rs1486806598 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:124258443 (GRCh38)
9:127020722 (GRCh37)
Canonical SPDI:: NC_000009.12:124258442:C:A,NC_000009.12:124258442:C:T
Gene:: NEK6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124258443C>A, NC_000009.12:g.124258443C>T, NC_000009.11:g.127020722C>A, NC_000009.11:g.127020722C>T, NM_001033016.1:c.*1121G>T, NM_001033016.1:c.*1121G>A

Select item 14865607758.

rs1486560775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124260111 (GRCh38)
9:127022390 (GRCh37)
Canonical SPDI:: NC_000009.12:124260110:G:A
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.124260111G>A, NC_000009.11:g.127022390G>A

Select item 14864442299.

rs1486444229 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 9:124260021 (GRCh38)
9:127022300 (GRCh37)
Canonical SPDI:: NC_000009.12:124260020:A:
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000045/12 (TOPMED)
-=0.000068/7 (GnomAD)
HGVS:: NC_000009.12:g.124260021del, NC_000009.11:g.127022300del

Select item 148481225610.

rs1484812256 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:124258739 (GRCh38)
9:127021018 (GRCh37)
Canonical SPDI:: NC_000009.12:124258738:CC:C
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000009.12:g.124258740del, NC_000009.11:g.127021019del, NM_001033016.1:c.*825del

Select item 148381102611.

rs1483811026 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:124260840 (GRCh38)
9:127023119 (GRCh37)
Canonical SPDI:: NC_000009.12:124260839:T:C
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.124260840T>C, NC_000009.11:g.127023119T>C, NM_001033016.1:c.*86A>G

Select item 148344589312.

rs1483445893 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124261446 (GRCh38)
9:127023725 (GRCh37)
Canonical SPDI:: NC_000009.12:124261445:G:A
Gene:: NEK6 (Varview), LOC613206 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000009.12:g.124261446G>A, NC_000009.11:g.127023725G>A

Select item 148336983013.

rs1483369830 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:124260373 (GRCh38)
9:127022652 (GRCh37)
Canonical SPDI:: NC_000009.12:124260372:G:T
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00003/8 (TOPMED)
T=0.000071/1 (TOMMO)
T=0.000342/1 (KOREAN)
HGVS:: NC_000009.12:g.124260373G>T, NC_000009.11:g.127022652G>T

Select item 148275759714.

rs1482757597 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:124263311 (GRCh38)
9:127025590 (GRCh37)
Canonical SPDI:: NC_000009.12:124263310:A:G
Gene:: NEK6 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124263311A>G, NC_000009.11:g.127025590A>G, XR_007061765.1:n.287A>G

Select item 148224160715.

rs1482241607 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:124262202 (GRCh38)
9:127024481 (GRCh37)
Canonical SPDI:: NC_000009.12:124262201:T:G
Gene:: NEK6 (Varview), LOC613206 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.124262202T>G, NC_000009.11:g.127024481T>G

Select item 148183326016.

rs1481833260 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:124259928 (GRCh38)
9:127022207 (GRCh37)
Canonical SPDI:: NC_000009.12:124259927:A:G
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000064/9 (GnomAD)
G=0.000068/18 (TOPMED)
HGVS:: NC_000009.12:g.124259928A>G, NC_000009.11:g.127022207A>G

Select item 148180782917.

rs1481807829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:124261901 (GRCh38)
9:127024180 (GRCh37)
Canonical SPDI:: NC_000009.12:124261900:C:T
Gene:: NEK6 (Varview), LOC613206 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.124261901C>T, NC_000009.11:g.127024180C>T

Select item 148161795818.

rs1481617958 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124259027 (GRCh38)
9:127021306 (GRCh37)
Canonical SPDI:: NC_000009.12:124259026:G:A
Gene:: NEK6 (Varview), LOC613206 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_upstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.124259027G>A, NC_000009.11:g.127021306G>A, NM_001033016.1:c.*537C>T

Select item 148105542019.

rs1481055420 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:124263324 (GRCh38)
9:127025603 (GRCh37)
Canonical SPDI:: NC_000009.12:124263323:G:C
Gene:: NEK6 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.124263324G>C, NC_000009.11:g.127025603G>C, XR_007061765.1:n.300G>C

Select item 148027818320.

rs1480278183 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:124261303 (GRCh38)
9:127023582 (GRCh37)
Canonical SPDI:: NC_000009.12:124261302:CCCC:CCC
Gene:: NEK6 (Varview), LOC613206 (Varview), LOC124902268 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000531/9 (TOMMO)
HGVS:: NC_000009.12:g.124261306del, NC_000009.11:g.127023585del