SNP Links for Gene (Select 6085) - SNP

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Select item 14896528601.

rs1489652860 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:148983704 (GRCh38)
7:148680796 (GRCh37)
Canonical SPDI:: NC_000007.14:148983703:A:G
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148983704A>G, NC_000007.13:g.148680796A>G

Select item 14890619172.

rs1489061917 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:148984097 (GRCh38)
7:148681189 (GRCh37)
Canonical SPDI:: NC_000007.14:148984096:A:G
Gene:: RNY3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.148984097A>G, NC_000007.13:g.148681189A>G

Select item 14889954663.

rs1488995466 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:148983142 (GRCh38)
7:148680234 (GRCh37)
Canonical SPDI:: NC_000007.14:148983141:C:A,NC_000007.14:148983141:C:G
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.148983142C>A, NC_000007.14:g.148983142C>G, NC_000007.13:g.148680234C>A, NC_000007.13:g.148680234C>G

Select item 14887032304.

rs1488703230 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:148982545 (GRCh38)
7:148679637 (GRCh37)
Canonical SPDI:: NC_000007.14:148982544:G:A
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.148982545G>A, NC_000007.13:g.148679637G>A

Select item 14886731145.

rs1488673114 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 7:148983464 (GRCh38)
7:148680557 (GRCh37)
Canonical SPDI:: NC_000007.14:148983464:GGGGG:GGGGGG
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148983469dup, NC_000007.13:g.148680561dup

Select item 14884073156.

rs1488407315 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:148982771 (GRCh38)
7:148679863 (GRCh37)
Canonical SPDI:: NC_000007.14:148982770:C:T
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148982771C>T, NC_000007.13:g.148679863C>T

Select item 14871683757.

rs1487168375 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:148983714 (GRCh38)
7:148680806 (GRCh37)
Canonical SPDI:: NC_000007.14:148983713:C:G
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.148983714C>G, NC_000007.13:g.148680806C>G

Select item 14870554868.

rs1487055486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:148984310 (GRCh38)
7:148681402 (GRCh37)
Canonical SPDI:: NC_000007.14:148984309:G:A
Gene:: RNY3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.148984310G>A, NC_000007.13:g.148681402G>A

Select item 14856026639.

rs1485602663 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:148982698 (GRCh38)
7:148679790 (GRCh37)
Canonical SPDI:: NC_000007.14:148982697:C:T
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148982698C>T, NC_000007.13:g.148679790C>T

Select item 148557382010.

rs1485573820 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 7:148983508 (GRCh38)
7:148680600 (GRCh37)
Canonical SPDI:: NC_000007.14:148983507:TTT:TT
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.148983510del, NC_000007.13:g.148680602del

Select item 148422455411.

rs1484224554 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:148983873 (GRCh38)
7:148680965 (GRCh37)
Canonical SPDI:: NC_000007.14:148983872:G:T
Gene:: RNY3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.148983873G>T, NC_000007.13:g.148680965G>T

Select item 148230410612.

rs1482304106 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:148982768 (GRCh38)
7:148679860 (GRCh37)
Canonical SPDI:: NC_000007.14:148982767:G:A
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000566/9 (TOMMO)
HGVS:: NC_000007.14:g.148982768G>A, NC_000007.13:g.148679860G>A

Select item 148106962613.

rs1481069626 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATGGACATATCTTCTTTTTTAAATTGTTAA>- [Show Flanks]
Chromosome:: 7:148982485 (GRCh38)
7:148679577 (GRCh37)
Canonical SPDI:: NC_000007.14:148982480:TTAAAATGGACATATCTTCTTTTTTAAATTGTTAA:TTAA
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTAA=0.000337/4 (ALFA)
-=0.000214/30 (GnomAD)
HGVS:: NC_000007.14:g.148982485_148982515del, NC_000007.13:g.148679577_148679607del

Select item 148078792114.

rs1480787921 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:148983961 (GRCh38)
7:148681053 (GRCh37)
Canonical SPDI:: NC_000007.14:148983960:T:C
Gene:: RNY3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148983961T>C, NC_000007.13:g.148681053T>C

Select item 148017678515.

rs1480176785 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:148982841 (GRCh38)
7:148679933 (GRCh37)
Canonical SPDI:: NC_000007.14:148982840:C:G
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148982841C>G, NC_000007.13:g.148679933C>G

Select item 148014480016.

rs1480144800 has merged into rs887182455 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT,TTT [Show Flanks]
Chromosome:: 7:148983665 (GRCh38)
7:148680757 (GRCh37)
Canonical SPDI:: NC_000007.14:148983664:TTTTTTTT:TTTTTTT,NC_000007.14:148983664:TTTTTTTT:TTTTTTTTT,NC_000007.14:148983664:TTTTTTTT:TTTTTTTTTT
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.001563/7 (Estonian)
-=0.002868/759 (TOPMED)
-=0.013333/8 (NorthernSweden)
HGVS:: NC_000007.14:g.148983672del, NC_000007.14:g.148983672dup, NC_000007.14:g.148983671_148983672dup, NC_000007.13:g.148680764del, NC_000007.13:g.148680764dup, NC_000007.13:g.148680763_148680764dup

Select item 147922476517.

rs1479224765 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:148982518 (GRCh38)
7:148679610 (GRCh37)
Canonical SPDI:: NC_000007.14:148982517:G:A,NC_000007.14:148982517:G:T
Gene:: RNY3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.148982518G>A, NC_000007.14:g.148982518G>T, NC_000007.13:g.148679610G>A, NC_000007.13:g.148679610G>T

Select item 147576526518.

rs1475765265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:148983840 (GRCh38)
7:148680932 (GRCh37)
Canonical SPDI:: NC_000007.14:148983839:C:A,NC_000007.14:148983839:C:T
Gene:: RNY3 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148983840C>A, NC_000007.14:g.148983840C>T, NC_000007.13:g.148680932C>A, NC_000007.13:g.148680932C>T, NR_004392.1:n.86C>A, NR_004392.1:n.86C>T

Select item 147286125819.

rs1472861258 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:148983292 (GRCh38)
7:148680384 (GRCh37)
Canonical SPDI:: NC_000007.14:148983291:C:T
Gene:: RNY3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.148983292C>T, NC_000007.13:g.148680384C>T

Select item 147210049420.

rs1472100494 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:148984267 (GRCh38)
7:148681359 (GRCh37)
Canonical SPDI:: NC_000007.14:148984266:T:A
Gene:: RNY3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.148984267T>A, NC_000007.13:g.148681359T>A

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