SNP Links for Gene (Select 606551) - SNP

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Select item 14910203641.

rs1491020364 has merged into rs35991384 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 16:35169340 (GRCh38)
16:34403711 (GRCh37)
Canonical SPDI:: NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000016.10:35169329:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: UBE2MP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000016.10:g.35169340_35169346del, NC_000016.10:g.35169343_35169346del, NC_000016.10:g.35169344_35169346del, NC_000016.10:g.35169345_35169346del, NC_000016.10:g.35169346del, NC_000016.10:g.35169346dup, NC_000016.10:g.35169345_35169346dup, NC_000016.10:g.35169344_35169346dup, NC_000016.10:g.35169343_35169346dup, NC_000016.10:g.35169337_35169346dup, NC_000016.9:g.34403711_34403717del, NC_000016.9:g.34403714_34403717del, NC_000016.9:g.34403715_34403717del, NC_000016.9:g.34403716_34403717del, NC_000016.9:g.34403717del, NC_000016.9:g.34403717dup, NC_000016.9:g.34403716_34403717dup, NC_000016.9:g.34403715_34403717dup, NC_000016.9:g.34403714_34403717dup, NC_000016.9:g.34403708_34403717dup

Select item 14905092982.

rs1490509298 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:35171794 (GRCh38)
16:34406165 (GRCh37)
Canonical SPDI:: NC_000016.10:35171793:T:C
Gene:: UBE2MP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.35171794T>C, NC_000016.9:g.34406165T>C

Select item 14903986643.

rs1490398664 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:35170206 (GRCh38)
16:34404577 (GRCh37)
Canonical SPDI:: NC_000016.10:35170205:C:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.35170206C>T, NC_000016.9:g.34404577C>T, NR_002837.1:n.186G>A

Select item 14892707794.

rs1489270779 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:35170261 (GRCh38)
16:34404632 (GRCh37)
Canonical SPDI:: NC_000016.10:35170260:G:A,NC_000016.10:35170260:G:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.35170261G>A, NC_000016.10:g.35170261G>T, NC_000016.9:g.34404632G>A, NC_000016.9:g.34404632G>T, NR_002837.1:n.131C>T, NR_002837.1:n.131C>A

Select item 14875202695.

rs1487520269 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:35169924 (GRCh38)
16:34404295 (GRCh37)
Canonical SPDI:: NC_000016.10:35169923:C:G,NC_000016.10:35169923:C:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0./0 (KOREAN)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.35169924C>G, NC_000016.10:g.35169924C>T, NC_000016.9:g.34404295C>G, NC_000016.9:g.34404295C>T, NR_002837.1:n.468G>C, NR_002837.1:n.468G>A

Select item 14863465516.

rs1486346551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:35170576 (GRCh38)
16:34404947 (GRCh37)
Canonical SPDI:: NC_000016.10:35170575:C:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35170576C>T, NC_000016.9:g.34404947C>T

Select item 14862091337.

rs1486209133 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:35168939 (GRCh38)
16:34403310 (GRCh37)
Canonical SPDI:: NC_000016.10:35168938:G:A,NC_000016.10:35168938:G:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
T=0.000071/2 (TOMMO)
HGVS:: NC_000016.10:g.35168939G>A, NC_000016.10:g.35168939G>T, NC_000016.9:g.34403310G>A, NC_000016.9:g.34403310G>T

Select item 14860713148.

rs1486071314 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTG [Show Flanks]
Chromosome:: 16:35169344 (GRCh38)
16:34403716 (GRCh37)
Canonical SPDI:: NC_000016.10:35169344:TTG:TTGTTG
Gene:: UBE2MP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: TTGTTG=0./0 (ALFA)
TTG=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35169345_35169347dup, NC_000016.9:g.34403716_34403718dup

Select item 14853099779.

rs1485309977 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:35172109 (GRCh38)
16:34406480 (GRCh37)
Canonical SPDI:: NC_000016.10:35172108:C:G
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD)
HGVS:: NC_000016.10:g.35172109C>G, NC_000016.9:g.34406480C>G

Select item 148527874310.

rs1485278743 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 16:35171073 (GRCh38)
16:34405444 (GRCh37)
Canonical SPDI:: NC_000016.10:35171072:T:A,NC_000016.10:35171072:T:G
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.35171073T>A, NC_000016.10:g.35171073T>G, NC_000016.9:g.34405444T>A, NC_000016.9:g.34405444T>G

Select item 148506962011.

rs1485069620 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:35169423 (GRCh38)
16:34403794 (GRCh37)
Canonical SPDI:: NC_000016.10:35169422:G:A
Gene:: UBE2MP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.35169423G>A, NC_000016.9:g.34403794G>A

Select item 148396241312.

rs1483962413 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:35169991 (GRCh38)
16:34404362 (GRCh37)
Canonical SPDI:: NC_000016.10:35169990:C:G
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.35169991C>G, NC_000016.9:g.34404362C>G, NR_002837.1:n.401G>C

Select item 148227434613.

rs1482274346 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:35169750 (GRCh38)
16:34404121 (GRCh37)
Canonical SPDI:: NC_000016.10:35169749:G:A
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35169750G>A, NC_000016.9:g.34404121G>A, NR_002837.1:n.642C>T

Select item 148211339614.

rs1482113396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:35172293 (GRCh38)
16:34406664 (GRCh37)
Canonical SPDI:: NC_000016.10:35172292:G:A
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35172293G>A, NC_000016.9:g.34406664G>A

Select item 148166744515.

rs1481667445 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AA [Show Flanks]
Chromosome:: 16:35171070 (GRCh38)
16:34405442 (GRCh37)
Canonical SPDI:: NC_000016.10:35171070:AA:AAAA
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
AA=0.000007/1 (GnomAD)
AA=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.35171071_35171072dup, NC_000016.9:g.34405442_34405443dup

Select item 148160567016.

rs1481605670 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:35170412 (GRCh38)
16:34404783 (GRCh37)
Canonical SPDI:: NC_000016.10:35170411:C:T
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.35170412C>T, NC_000016.9:g.34404783C>T

Select item 148114498717.

rs1481144987 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GCCGC [Show Flanks]
Chromosome:: 16:35170367 (GRCh38)
16:34404739 (GRCh37)
Canonical SPDI:: NC_000016.10:35170367:GCCGCGCCGC:GCCGCGCCGCGCCGC
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCCGCGCCGCGCCGC=0./0 (ALFA)
GCCGC=0.000004/1 (TOPMED)
GCCGC=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35170368GCCGC[3], NC_000016.9:g.34404739GCCGC[3], NR_002837.1:n.15GCGGC[3]

Select item 148070366418.

rs1480703664 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTT>- [Show Flanks]
Chromosome:: 16:35171507 (GRCh38)
16:34405878 (GRCh37)
Canonical SPDI:: NC_000016.10:35171503:TTTATTT:TTT
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.35171507_35171510del, NC_000016.9:g.34405878_34405881del

Select item 148062508319.

rs1480625083 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:35170256 (GRCh38)
16:34404627 (GRCh37)
Canonical SPDI:: NC_000016.10:35170255:C:A
Gene:: UBE2MP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.35170256C>A, NC_000016.9:g.34404627C>A, NR_002837.1:n.136G>T

Select item 148002938520.

rs1480029385 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:35171426 (GRCh38)
16:34405797 (GRCh37)
Canonical SPDI:: NC_000016.10:35171425:A:G
Gene:: UBE2MP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.35171426A>G, NC_000016.9:g.34405797A>G

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