SNP Links for Gene (Select 5969) - SNP

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Select item 14906612031.

rs1490661203 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:79139949 (GRCh38)
2:79367075 (GRCh37)
Canonical SPDI:: NC_000002.12:79139948:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.79139949A>G, NC_000002.11:g.79367075A>G

Select item 14894623482.

rs1489462348 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:79139732 (GRCh38)
2:79366858 (GRCh37)
Canonical SPDI:: NC_000002.12:79139731:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.79139732A>G, NC_000002.11:g.79366858A>G

Select item 14892779963.

rs1489277996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:79137578 (GRCh38)
2:79364704 (GRCh37)
Canonical SPDI:: NC_000002.12:79137577:G:A,NC_000002.12:79137577:G:C
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.79137578G>A, NC_000002.12:g.79137578G>C, NC_000002.11:g.79364704G>A, NC_000002.11:g.79364704G>C, NR_002714.1:n.850C>T, NR_002714.1:n.850C>G

Select item 14880927224.

rs1488092722 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:79136663 (GRCh38)
2:79363789 (GRCh37)
Canonical SPDI:: NC_000002.12:79136662:C:A
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.79136663C>A, NC_000002.11:g.79363789C>A, NR_002714.1:n.1765G>T, NM_006508.1:c.*365G>T

Select item 14880622105.

rs1488062210 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:79138941 (GRCh38)
2:79366067 (GRCh37)
Canonical SPDI:: NC_000002.12:79138940:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.79138941A>G, NC_000002.11:g.79366067A>G

Select item 14874692556.

rs1487469255 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:79136890 (GRCh38)
2:79364016 (GRCh37)
Canonical SPDI:: NC_000002.12:79136889:G:A,NC_000002.12:79136889:G:C
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00034/1 (KOREAN)
HGVS:: NC_000002.12:g.79136890G>A, NC_000002.12:g.79136890G>C, NC_000002.11:g.79364016G>A, NC_000002.11:g.79364016G>C, NR_002714.1:n.1538C>T, NR_002714.1:n.1538C>G, NM_006508.1:c.*138C>T, NM_006508.1:c.*138C>G

Select item 14870835817.

rs1487083581 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:79137960 (GRCh38)
2:79365086 (GRCh37)
Canonical SPDI:: NC_000002.12:79137959:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000002.12:g.79137960A>G, NC_000002.11:g.79365086A>G, NR_002714.1:n.468T>C

Select item 14858012208.

rs1485801220 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:79135701 (GRCh38)
2:79362827 (GRCh37)
Canonical SPDI:: NC_000002.12:79135700:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.79135701A>G, NC_000002.11:g.79362827A>G, NR_002714.1:n.2727T>C, NM_006508.1:c.*1327T>C

Select item 14847049399.

rs1484704939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:79138541 (GRCh38)
2:79365667 (GRCh37)
Canonical SPDI:: NC_000002.12:79138540:C:T
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000002.12:g.79138541C>T, NC_000002.11:g.79365667C>T

Select item 148449323810.

rs1484493238 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:79137410 (GRCh38)
2:79364536 (GRCh37)
Canonical SPDI:: NC_000002.12:79137409:C:T
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.79137410C>T, NC_000002.11:g.79364536C>T, NR_002714.1:n.1018G>A

Select item 148231047411.

rs1482310474 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:79136465 (GRCh38)
2:79363591 (GRCh37)
Canonical SPDI:: NC_000002.12:79136464:C:G
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.79136465C>G, NC_000002.11:g.79363591C>G, NR_002714.1:n.1963G>C, NM_006508.1:c.*563G>C

Select item 148128588112.

rs1481285881 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:79136723 (GRCh38)
2:79363849 (GRCh37)
Canonical SPDI:: NC_000002.12:79136722:T:C
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.79136723T>C, NC_000002.11:g.79363849T>C, NR_002714.1:n.1705A>G, NM_006508.1:c.*305A>G

Select item 148104917813.

rs1481049178 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:79140052 (GRCh38)
2:79367178 (GRCh37)
Canonical SPDI:: NC_000002.12:79140051:T:C
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.79140052T>C, NC_000002.11:g.79367178T>C

Select item 148077161914.

rs1480771619 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:79136789 (GRCh38)
2:79363915 (GRCh37)
Canonical SPDI:: NC_000002.12:79136788:T:C
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.79136789T>C, NC_000002.11:g.79363915T>C, NR_002714.1:n.1639A>G, NM_006508.1:c.*239A>G

Select item 148039663215.

rs1480396632 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:79140169 (GRCh38)
2:79367295 (GRCh37)
Canonical SPDI:: NC_000002.12:79140168:C:T
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000002.12:g.79140169C>T, NC_000002.11:g.79367295C>T

Select item 148030666616.

rs1480306666 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:79135825 (GRCh38)
2:79362951 (GRCh37)
Canonical SPDI:: NC_000002.12:79135824:G:A
Gene:: REG1CP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.79135825G>A, NC_000002.11:g.79362951G>A, NR_002714.1:n.2603C>T, NM_006508.1:c.*1203C>T

Select item 147849843617.

rs1478498436 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:79139120 (GRCh38)
2:79366246 (GRCh37)
Canonical SPDI:: NC_000002.12:79139119:G:A
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.79139120G>A, NC_000002.11:g.79366246G>A

Select item 147823826218.

rs1478238262 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:79135449 (GRCh38)
2:79362575 (GRCh37)
Canonical SPDI:: NC_000002.12:79135448:A:C,NC_000002.12:79135448:A:G
Gene:: REG1CP (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.79135449A>C, NC_000002.12:g.79135449A>G, NC_000002.11:g.79362575A>C, NC_000002.11:g.79362575A>G

Select item 147814771019.

rs1478147710 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:79138569 (GRCh38)
2:79365695 (GRCh37)
Canonical SPDI:: NC_000002.12:79138568:T:C
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.79138569T>C, NC_000002.11:g.79365695T>C

Select item 147772410720.

rs1477724107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:79140043 (GRCh38)
2:79367169 (GRCh37)
Canonical SPDI:: NC_000002.12:79140042:G:T
Gene:: REG1CP (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.79140043G>T, NC_000002.11:g.79367169G>T

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