SNP Links for Gene (Select 5919) - SNP

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Select item 14897165131.

rs1489716513 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150338036 (GRCh38)
7:150035125 (GRCh37)
Canonical SPDI:: NC_000007.14:150338035:G:A
Gene:: RARRES2 (Varview), LRRC61 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150338036G>A, NC_000007.13:g.150035125G>A, NM_023942.3:c.*395G>A, NM_023942.2:c.*395G>A, NM_001142928.2:c.*395G>A, NM_001142928.1:c.*395G>A, NM_001363435.2:c.*395G>A, NM_001363433.1:c.*395G>A, NM_001363434.1:c.*395G>A, NM_001363435.1:c.*395G>A

Select item 14890741872.

rs1489074187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:150340954 (GRCh38)
7:150038043 (GRCh37)
Canonical SPDI:: NC_000007.14:150340953:G:A,NC_000007.14:150340953:G:C
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.150340954G>A, NC_000007.14:g.150340954G>C, NC_000007.13:g.150038043G>A, NC_000007.13:g.150038043G>C

Select item 14888608243.

rs1488860824 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 7:150341823 (GRCh38)
7:150038912 (GRCh37)
Canonical SPDI:: NC_000007.14:150341822:T:A,NC_000007.14:150341822:T:C
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
A=0.000027/3 (GnomAD)
HGVS:: NC_000007.14:g.150341823T>A, NC_000007.14:g.150341823T>C, NC_000007.13:g.150038912T>A, NC_000007.13:g.150038912T>C

Select item 14882173394.

rs1488217339 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150342662 (GRCh38)
7:150039751 (GRCh37)
Canonical SPDI:: NC_000007.14:150342661:C:T
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150342662C>T, NC_000007.13:g.150039751C>T

Select item 14881616165.

rs1488161616 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:150342601 (GRCh38)
7:150039690 (GRCh37)
Canonical SPDI:: NC_000007.14:150342600:A:G
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000051/4 (GnomAD)
HGVS:: NC_000007.14:g.150342601A>G, NC_000007.13:g.150039690A>G

Select item 14877368836.

rs1487736883 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:150339291 (GRCh38)
7:150036380 (GRCh37)
Canonical SPDI:: NC_000007.14:150339290:T:C
Gene:: RARRES2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.150339291T>C, NC_000007.13:g.150036380T>C

Select item 14873278797.

rs1487327879 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150339167 (GRCh38)
7:150036256 (GRCh37)
Canonical SPDI:: NC_000007.14:150339166:C:T
Gene:: RARRES2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.150339167C>T, NC_000007.13:g.150036256C>T

Select item 14872813198.

rs1487281319 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:150339513 (GRCh38)
7:150036602 (GRCh37)
Canonical SPDI:: NC_000007.14:150339512:T:C
Gene:: RARRES2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.150339513T>C, NC_000007.13:g.150036602T>C

Select item 14864909809.

rs1486490980 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150342847 (GRCh38)
7:150039936 (GRCh37)
Canonical SPDI:: NC_000007.14:150342846:G:A
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.150342847G>A, NC_000007.13:g.150039936G>A

Select item 148578498710.

rs1485784987 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>C
Chromosome:: no mapping
Canonical SPDI:

Select item 148544282711.

rs1485442827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150338099 (GRCh38)
7:150035188 (GRCh37)
Canonical SPDI:: NC_000007.14:150338098:C:T
Gene:: RARRES2 (Varview), LRRC61 (Varview)
Functional Consequence:: downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150338099C>T, NC_000007.13:g.150035188C>T, NM_023942.3:c.*458C>T, NM_023942.2:c.*458C>T, NM_001142928.2:c.*458C>T, NM_001142928.1:c.*458C>T, NM_001363435.2:c.*458C>T, NM_001363433.1:c.*458C>T, NM_001363434.1:c.*458C>T, NM_001363435.1:c.*458C>T

Select item 148516511212.

rs1485165112 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150338641 (GRCh38)
7:150035730 (GRCh37)
Canonical SPDI:: NC_000007.14:150338640:G:A
Gene:: RARRES2 (Varview), LRRC61 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,missense_variant,coding_sequence_variant,500B_downstream_variant
HGVS:: NC_000007.14:g.150338641G>A, NC_000007.13:g.150035730G>A, NM_002889.4:c.476C>T, NM_002889.3:c.476C>T, XR_007060121.1:n.564C>T, NP_002880.1:p.Ala159Val

Select item 148492765813.

rs1484927658 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:150339799 (GRCh38)
7:150036888 (GRCh37)
Canonical SPDI:: NC_000007.14:150339798:T:C
Gene:: RARRES2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150339799T>C, NC_000007.13:g.150036888T>C

Select item 148490923214.

rs1484909232 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:150340743 (GRCh38)
7:150037832 (GRCh37)
Canonical SPDI:: NC_000007.14:150340742:G:A,NC_000007.14:150340742:G:C
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.150340743G>A, NC_000007.14:g.150340743G>C, NC_000007.13:g.150037832G>A, NC_000007.13:g.150037832G>C

Select item 148485651215.

rs1484856512 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:150341842 (GRCh38)
7:150038931 (GRCh37)
Canonical SPDI:: NC_000007.14:150341841:G:A,NC_000007.14:150341841:G:T
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000023/3 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.150341842G>A, NC_000007.14:g.150341842G>T, NC_000007.13:g.150038931G>A, NC_000007.13:g.150038931G>T

Select item 148470035916.

rs1484700359 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150338976 (GRCh38)
7:150036065 (GRCh37)
Canonical SPDI:: NC_000007.14:150338975:C:T
Gene:: RARRES2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.150338976C>T, NC_000007.13:g.150036065C>T

Select item 148421639517.

rs1484216395 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150340002 (GRCh38)
7:150037091 (GRCh37)
Canonical SPDI:: NC_000007.14:150340001:C:T
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150340002C>T, NC_000007.13:g.150037091C>T

Select item 148344709218.

rs1483447092 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:150338197 (GRCh38)
7:150035286 (GRCh37)
Canonical SPDI:: NC_000007.14:150338196:G:A,NC_000007.14:150338196:G:T
Gene:: RARRES2 (Varview), LRRC61 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150338197G>A, NC_000007.14:g.150338197G>T, NC_000007.13:g.150035286G>A, NC_000007.13:g.150035286G>T

Select item 148336112519.

rs1483361125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150341637 (GRCh38)
7:150038726 (GRCh37)
Canonical SPDI:: NC_000007.14:150341636:C:T
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150341637C>T, NC_000007.13:g.150038726C>T, NM_002889.3:c.-80G>A

Select item 148322323420.

rs1483223234 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:150341246 (GRCh38)
7:150038335 (GRCh37)
Canonical SPDI:: NC_000007.14:150341245:T:A
Gene:: RARRES2 (Varview), LOC107986858 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.150341246T>A, NC_000007.13:g.150038335T>A

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