SNP Links for Gene (Select 5911) - SNP

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Select item 14910759251.

rs1491075925 has merged into rs35791914 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAAA>-,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 13:97435469 (GRCh38)
13:98087723 (GRCh37)
Canonical SPDI:: NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:97435465:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.013/65 (1000Genomes)
HGVS:: NC_000013.11:g.97435469_97435487del, NC_000013.11:g.97435475_97435487del, NC_000013.11:g.97435476_97435487del, NC_000013.11:g.97435477_97435487del, NC_000013.11:g.97435478_97435487del, NC_000013.11:g.97435479_97435487del, NC_000013.11:g.97435480_97435487del, NC_000013.11:g.97435481_97435487del, NC_000013.11:g.97435482_97435487del, NC_000013.11:g.97435483_97435487del, NC_000013.11:g.97435484_97435487del, NC_000013.11:g.97435485_97435487del, NC_000013.11:g.97435486_97435487del, NC_000013.11:g.97435487del, NC_000013.11:g.97435487dup, NC_000013.11:g.97435486_97435487dup, NC_000013.11:g.97435485_97435487dup, NC_000013.11:g.97435484_97435487dup, NC_000013.11:g.97435483_97435487dup, NC_000013.11:g.97435482_97435487dup, NC_000013.11:g.97435481_97435487dup, NC_000013.11:g.97435475_97435487dup, NC_000013.10:g.98087723_98087741del, NC_000013.10:g.98087729_98087741del, NC_000013.10:g.98087730_98087741del, NC_000013.10:g.98087731_98087741del, NC_000013.10:g.98087732_98087741del, NC_000013.10:g.98087733_98087741del, NC_000013.10:g.98087734_98087741del, NC_000013.10:g.98087735_98087741del, NC_000013.10:g.98087736_98087741del, NC_000013.10:g.98087737_98087741del, NC_000013.10:g.98087738_98087741del, NC_000013.10:g.98087739_98087741del, NC_000013.10:g.98087740_98087741del, NC_000013.10:g.98087741del, NC_000013.10:g.98087741dup, NC_000013.10:g.98087740_98087741dup, NC_000013.10:g.98087739_98087741dup, NC_000013.10:g.98087738_98087741dup, NC_000013.10:g.98087737_98087741dup, NC_000013.10:g.98087736_98087741dup, NC_000013.10:g.98087735_98087741dup, NC_000013.10:g.98087729_98087741dup

Select item 14909711532.

rs1490971153 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:97451409 (GRCh38)
13:98103663 (GRCh37)
Canonical SPDI:: NC_000013.11:97451408:C:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.97451409C>T, NC_000013.10:g.98103663C>T

Select item 14907978913.

rs1490797891 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:97439034 (GRCh38)
13:98091288 (GRCh37)
Canonical SPDI:: NC_000013.11:97439033:C:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.97439034C>T, NC_000013.10:g.98091288C>T

Select item 14906245514.

rs1490624551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:97461339 (GRCh38)
13:98113593 (GRCh37)
Canonical SPDI:: NC_000013.11:97461338:G:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97461339G>T, NC_000013.10:g.98113593G>T

Select item 14905604225.

rs1490560422 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:97435280 (GRCh38)
13:98087534 (GRCh37)
Canonical SPDI:: NC_000013.11:97435279:T:G
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97435280T>G, NC_000013.10:g.98087534T>G

Select item 14904949816.

rs1490494981 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:97452952 (GRCh38)
13:98105206 (GRCh37)
Canonical SPDI:: NC_000013.11:97452951:T:C
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97452952T>C, NC_000013.10:g.98105206T>C

Select item 14904520597.

rs1490452059 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:97436025 (GRCh38)
13:98088279 (GRCh37)
Canonical SPDI:: NC_000013.11:97436024:T:C
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.97436025T>C, NC_000013.10:g.98088279T>C

Select item 14904492898.

rs1490449289 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 13:97461968 (GRCh38)
13:98114223 (GRCh37)
Canonical SPDI:: NC_000013.11:97461968::T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.000107/14 (GnomAD)
T=0.000625/4 (1000Genomes)
T=0.001699/28 (TOMMO)
T=0.002818/5 (Korea1K)
HGVS:: NC_000013.11:g.97461968_97461969insT, NC_000013.10:g.98114222_98114223insT

Select item 14903107149.

rs1490310714 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:97443272 (GRCh38)
13:98095526 (GRCh37)
Canonical SPDI:: NC_000013.11:97443271:T:G
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.97443272T>G, NC_000013.10:g.98095526T>G

Select item 149030661310.

rs1490306613 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:97440246 (GRCh38)
13:98092500 (GRCh37)
Canonical SPDI:: NC_000013.11:97440245:G:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00092/15 (ALFA)
HGVS:: NC_000013.11:g.97440246G>T, NC_000013.10:g.98092500G>T

Select item 149029391811.

rs1490293918 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:97460341 (GRCh38)
13:98112595 (GRCh37)
Canonical SPDI:: NC_000013.11:97460340:G:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97460341G>T, NC_000013.10:g.98112595G>T

Select item 149028743512.

rs1490287435 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:97464480 (GRCh38)
13:98116734 (GRCh37)
Canonical SPDI:: NC_000013.11:97464479:T:C
Gene:: RAP2A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000102/2 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000013.11:g.97464480T>C, NC_000013.10:g.98116734T>C, NM_021033.7:c.*38T>C, NM_021033.6:c.*38T>C

Select item 149011705313.

rs1490117053 [Homo sapiens]

Variant type:: DEL
Alleles:: AATA>- [Show Flanks]
Chromosome:: 13:97450993 (GRCh38)
13:98103247 (GRCh37)
Canonical SPDI:: NC_000013.11:97450992:AATA:
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.97450993_97450996del, NC_000013.10:g.98103247_98103250del

Select item 149004294214.

rs1490042942 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:97467428 (GRCh38)
13:98119682 (GRCh37)
Canonical SPDI:: NC_000013.11:97467427:C:G
Gene:: RAP2A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.97467428C>G, NC_000013.10:g.98119682C>G, NM_021033.7:c.*2986C>G, NM_021033.6:c.*2986C>G

Select item 148995804315.

rs1489958043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:97462941 (GRCh38)
13:98115195 (GRCh37)
Canonical SPDI:: NC_000013.11:97462940:T:G
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.97462941T>G, NC_000013.10:g.98115195T>G

Select item 148989498416.

rs1489894984 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:97444004 (GRCh38)
13:98096258 (GRCh37)
Canonical SPDI:: NC_000013.11:97444003:T:C
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97444004T>C, NC_000013.10:g.98096258T>C

Select item 148986899617.

rs1489868996 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:97442878 (GRCh38)
13:98095132 (GRCh37)
Canonical SPDI:: NC_000013.11:97442877:A:C
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.97442878A>C, NC_000013.10:g.98095132A>C

Select item 148981919718.

rs1489819197 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:97444404 (GRCh38)
13:98096658 (GRCh37)
Canonical SPDI:: NC_000013.11:97444403:A:G
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.97444404A>G, NC_000013.10:g.98096658A>G

Select item 148980535519.

rs1489805355 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:97460800 (GRCh38)
13:98113054 (GRCh37)
Canonical SPDI:: NC_000013.11:97460799:C:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.97460800C>T, NC_000013.10:g.98113054C>T

Select item 148969951720.

rs1489699517 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:97434882 (GRCh38)
13:98087136 (GRCh37)
Canonical SPDI:: NC_000013.11:97434881:G:C,NC_000013.11:97434881:G:T
Gene:: RAP2A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000342/1 (KOREAN)
HGVS:: NC_000013.11:g.97434882G>C, NC_000013.11:g.97434882G>T, NC_000013.10:g.98087136G>C, NC_000013.10:g.98087136G>T

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