SNP Links for Gene (Select 5780) - SNP

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Select item 14915894611.

rs1491589461 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 15:75530562 (GRCh38)
15:75822903 (GRCh37)
Canonical SPDI:: NC_000015.10:75530561:TT:
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.01635/194 (ALFA)
HGVS:: NC_000015.10:g.75530562_75530563del, NC_000015.9:g.75822903_75822904del

Select item 14915712712.

rs1491571271 has merged into rs1190146251 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>-,TA,TATATA [Show Flanks]
Chromosome:: 15:75530723 (GRCh38)
15:75823064 (GRCh37)
Canonical SPDI:: NC_000015.10:75530717:ATATATATA:ATATA,NC_000015.10:75530717:ATATATATA:ATATATA,NC_000015.10:75530717:ATATATATA:ATATATATATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATA=0./0 (ALFA)
HGVS:: NC_000015.10:g.75530719TA[2], NC_000015.10:g.75530719TA[3], NC_000015.10:g.75530719TA[5], NC_000015.9:g.75823060TA[2], NC_000015.9:g.75823060TA[3], NC_000015.9:g.75823060TA[5]

Select item 14915686043.

rs1491568604 has merged into rs1196645006 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:75477844 (GRCh38)
15:75770185 (GRCh37)
Canonical SPDI:: NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:75477833:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: PTPN9 (Varview), LOC105370902 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000015.10:g.75477844_75477858del, NC_000015.10:g.75477845_75477858del, NC_000015.10:g.75477846_75477858del, NC_000015.10:g.75477847_75477858del, NC_000015.10:g.75477848_75477858del, NC_000015.10:g.75477849_75477858del, NC_000015.10:g.75477850_75477858del, NC_000015.10:g.75477851_75477858del, NC_000015.10:g.75477852_75477858del, NC_000015.10:g.75477853_75477858del, NC_000015.10:g.75477854_75477858del, NC_000015.10:g.75477855_75477858del, NC_000015.10:g.75477856_75477858del, NC_000015.10:g.75477857_75477858del, NC_000015.10:g.75477858del, NC_000015.10:g.75477858dup, NC_000015.10:g.75477857_75477858dup, NC_000015.10:g.75477856_75477858dup, NC_000015.10:g.75477855_75477858dup, NC_000015.10:g.75477854_75477858dup, NC_000015.10:g.75477853_75477858dup, NC_000015.10:g.75477852_75477858dup, NC_000015.10:g.75477851_75477858dup, NC_000015.10:g.75477850_75477858dup, NC_000015.10:g.75477849_75477858dup, NC_000015.10:g.75477848_75477858dup, NC_000015.10:g.75477847_75477858dup, NC_000015.10:g.75477858_75477859insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.10:g.75477858_75477859insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.9:g.75770185_75770199del, NC_000015.9:g.75770186_75770199del, NC_000015.9:g.75770187_75770199del, NC_000015.9:g.75770188_75770199del, NC_000015.9:g.75770189_75770199del, NC_000015.9:g.75770190_75770199del, NC_000015.9:g.75770191_75770199del, NC_000015.9:g.75770192_75770199del, NC_000015.9:g.75770193_75770199del, NC_000015.9:g.75770194_75770199del, NC_000015.9:g.75770195_75770199del, NC_000015.9:g.75770196_75770199del, NC_000015.9:g.75770197_75770199del, NC_000015.9:g.75770198_75770199del, NC_000015.9:g.75770199del, NC_000015.9:g.75770199dup, NC_000015.9:g.75770198_75770199dup, NC_000015.9:g.75770197_75770199dup, NC_000015.9:g.75770196_75770199dup, NC_000015.9:g.75770195_75770199dup, NC_000015.9:g.75770194_75770199dup, NC_000015.9:g.75770193_75770199dup, NC_000015.9:g.75770192_75770199dup, NC_000015.9:g.75770191_75770199dup, NC_000015.9:g.75770190_75770199dup, NC_000015.9:g.75770189_75770199dup, NC_000015.9:g.75770188_75770199dup, NC_000015.9:g.75770199_75770200insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000015.9:g.75770199_75770200insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14915624004.

rs1491562400 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:75560139 (GRCh38)
15:75852480 (GRCh37)
Canonical SPDI:: NC_000015.10:75560138:CA:
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000015.10:g.75560139_75560140del, NC_000015.9:g.75852480_75852481del

Select item 14915530195.

rs1491553019 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATA [Show Flanks]
Chromosome:: 15:75530656 (GRCh38)
15:75822998 (GRCh37)
Canonical SPDI:: NC_000015.10:75530656:ATA:ATAATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATAATA=0.00008/1 (ALFA)
HGVS:: NC_000015.10:g.75530657_75530659dup, NC_000015.9:g.75822998_75823000dup

Select item 14915348696.

rs1491534869 has merged into rs1207870145 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 15:75530742 (GRCh38)
15:75823083 (GRCh37)
Canonical SPDI:: NC_000015.10:75530737:TATATA:TATA,NC_000015.10:75530737:TATATA:TATATATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TATATATA=0./0 (ALFA)
-=0.0001/3 (GnomAD)
HGVS:: NC_000015.10:g.75530738TA[2], NC_000015.10:g.75530738TA[4], NC_000015.9:g.75823079TA[2], NC_000015.9:g.75823079TA[4]

Select item 14915194177.

rs1491519417 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATA [Show Flanks]
Chromosome:: 15:75530712 (GRCh38)
15:75823054 (GRCh37)
Canonical SPDI:: NC_000015.10:75530712:ATA:ATAATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAATA=0./0 (ALFA)
ATA=0.00151/26 (GnomAD)
HGVS:: NC_000015.10:g.75530713_75530715dup, NC_000015.9:g.75823054_75823056dup

Select item 14914910548.

rs1491491054 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 15:75486779 (GRCh38)
15:75779121 (GRCh37)
Canonical SPDI:: NC_000015.10:75486779:T:TTT
Gene:: PTPN9 (Varview), LOC105370902 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0.0002/1 (ALFA)
HGVS:: NC_000015.10:g.75486780_75486781insTT, NC_000015.9:g.75779121_75779122insTT

Select item 14914658989.

rs1491465898 has merged into rs989638683 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 15:75523960 (GRCh38)
15:75816301 (GRCh37)
Canonical SPDI:: NC_000015.10:75523959:GGGGGGG:GGGGGG,NC_000015.10:75523959:GGGGGGG:GGGGGGGG
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0./0 (ALFA)
HGVS:: NC_000015.10:g.75523966del, NC_000015.10:g.75523966dup, NC_000015.9:g.75816307del, NC_000015.9:g.75816307dup

Select item 149146440910.

rs1491464409 has merged into rs34339660 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 15:75520492 (GRCh38)
15:75812833 (GRCh37)
Canonical SPDI:: NC_000015.10:75520482:TGTGTGTGTGT:TGTGTGTGT,NC_000015.10:75520482:TGTGTGTGTGT:TGTGTGTGTGTGT
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGT=0.000214/3 (ALFA)
-=0.000079/21 (TOPMED)
-=0.001345/96 (GnomAD)
HGVS:: NC_000015.10:g.75520484GT[4], NC_000015.10:g.75520484GT[6], NC_000015.9:g.75812825GT[4], NC_000015.9:g.75812825GT[6]

Select item 149145207811.

rs1491452078 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 15:75530717 (GRCh38)
15:75823058 (GRCh37)
Canonical SPDI:: NC_000015.10:75530716:AA:
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000015.10:g.75530717_75530718del, NC_000015.9:g.75823058_75823059del

Select item 149144603912.

rs1491446039 has merged into rs35248279 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA [Show Flanks]
Chromosome:: 15:75500358 (GRCh38)
15:75792699 (GRCh37)
Canonical SPDI:: NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000015.10:75500344:ACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACA
Gene:: PTPN9 (Varview), LOC105370902 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000015.10:g.75500346CA[6], NC_000015.10:g.75500346CA[7], NC_000015.10:g.75500346CA[8], NC_000015.10:g.75500346CA[9], NC_000015.10:g.75500346CA[10], NC_000015.10:g.75500346CA[11], NC_000015.10:g.75500346CA[12], NC_000015.10:g.75500346CA[14], NC_000015.10:g.75500346CA[15], NC_000015.10:g.75500346CA[16], NC_000015.10:g.75500346CA[17], NC_000015.10:g.75500346CA[18], NC_000015.9:g.75792687CA[6], NC_000015.9:g.75792687CA[7], NC_000015.9:g.75792687CA[8], NC_000015.9:g.75792687CA[9], NC_000015.9:g.75792687CA[10], NC_000015.9:g.75792687CA[11], NC_000015.9:g.75792687CA[12], NC_000015.9:g.75792687CA[14], NC_000015.9:g.75792687CA[15], NC_000015.9:g.75792687CA[16], NC_000015.9:g.75792687CA[17], NC_000015.9:g.75792687CA[18]

Select item 149144113513.

rs1491441135 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:75544810 (GRCh38)
15:75837151 (GRCh37)
Canonical SPDI:: NC_000015.10:75544809:AT:
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.75544810_75544811del, NC_000015.9:g.75837151_75837152del

Select item 149138711114.

rs1491387111 has merged into rs1420968374 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 15:75500344 (GRCh38)
15:75792685 (GRCh37)
Canonical SPDI:: NC_000015.10:75500342:ATA:A,NC_000015.10:75500342:ATA:ATATA
Gene:: PTPN9 (Varview), LOC105370902 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATA=0./0 (ALFA)
AT=0.00016/1 (1000Genomes)
-=0.07228/268 (TWINSUK)
-=0.07421/286 (ALSPAC)
HGVS:: NC_000015.10:g.75500344_75500345del, NC_000015.10:g.75500344_75500345dup, NC_000015.9:g.75792685_75792686del, NC_000015.9:g.75792685_75792686dup

Select item 149137988815.

rs1491379888 has merged into rs10699634 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:75524787 (GRCh38)
15:75817128 (GRCh37)
Canonical SPDI:: NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75524777:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
AAAAAAAAAAA=0.2382/1193 (1000Genomes)
HGVS:: NC_000015.10:g.75524787_75524801del, NC_000015.10:g.75524789_75524801del, NC_000015.10:g.75524790_75524801del, NC_000015.10:g.75524791_75524801del, NC_000015.10:g.75524792_75524801del, NC_000015.10:g.75524793_75524801del, NC_000015.10:g.75524794_75524801del, NC_000015.10:g.75524795_75524801del, NC_000015.10:g.75524796_75524801del, NC_000015.10:g.75524797_75524801del, NC_000015.10:g.75524798_75524801del, NC_000015.10:g.75524799_75524801del, NC_000015.10:g.75524800_75524801del, NC_000015.10:g.75524801del, NC_000015.10:g.75524801dup, NC_000015.10:g.75524800_75524801dup, NC_000015.10:g.75524799_75524801dup, NC_000015.10:g.75524798_75524801dup, NC_000015.10:g.75524797_75524801dup, NC_000015.10:g.75524796_75524801dup, NC_000015.10:g.75524795_75524801dup, NC_000015.10:g.75524794_75524801dup, NC_000015.10:g.75524793_75524801dup, NC_000015.10:g.75524792_75524801dup, NC_000015.10:g.75524791_75524801dup, NC_000015.10:g.75524783_75524801dup, NC_000015.10:g.75524778_75524801dup, NC_000015.10:g.75524801_75524802insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.75524801_75524802insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.75524801_75524802insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.75817128_75817142del, NC_000015.9:g.75817130_75817142del, NC_000015.9:g.75817131_75817142del, NC_000015.9:g.75817132_75817142del, NC_000015.9:g.75817133_75817142del, NC_000015.9:g.75817134_75817142del, NC_000015.9:g.75817135_75817142del, NC_000015.9:g.75817136_75817142del, NC_000015.9:g.75817137_75817142del, NC_000015.9:g.75817138_75817142del, NC_000015.9:g.75817139_75817142del, NC_000015.9:g.75817140_75817142del, NC_000015.9:g.75817141_75817142del, NC_000015.9:g.75817142del, NC_000015.9:g.75817142dup, NC_000015.9:g.75817141_75817142dup, NC_000015.9:g.75817140_75817142dup, NC_000015.9:g.75817139_75817142dup, NC_000015.9:g.75817138_75817142dup, NC_000015.9:g.75817137_75817142dup, NC_000015.9:g.75817136_75817142dup, NC_000015.9:g.75817135_75817142dup, NC_000015.9:g.75817134_75817142dup, NC_000015.9:g.75817133_75817142dup, NC_000015.9:g.75817132_75817142dup, NC_000015.9:g.75817124_75817142dup, NC_000015.9:g.75817119_75817142dup, NC_000015.9:g.75817142_75817143insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.75817142_75817143insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.75817142_75817143insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 149137542816.

rs1491375428 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:75537443 (GRCh38)
15:75829784 (GRCh37)
Canonical SPDI:: NC_000015.10:75537442:TA:
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00002/1 (GnomAD)
HGVS:: NC_000015.10:g.75537443_75537444del, NC_000015.9:g.75829784_75829785del

Select item 149136702417.

rs1491367024 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:75481382 (GRCh38)
15:75773723 (GRCh37)
Canonical SPDI:: NC_000015.10:75481380:GAG:G
Gene:: PTPN9 (Varview), LOC105370902 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00497/59 (ALFA)
-=0.01396/23 (TOMMO)
-=0.02469/8 (Korea1K)
HGVS:: NC_000015.10:g.75481382_75481383del, NC_000015.9:g.75773723_75773724del

Select item 149129463818.

rs1491294638 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:75530716 (GRCh38)
15:75823057 (GRCh37)
Canonical SPDI:: NC_000015.10:75530711:TATATA:TATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TATA=0./0 (ALFA)
-=0.00014/4 (GnomAD)
HGVS:: NC_000015.10:g.75530712TA[2], NC_000015.9:g.75823053TA[2]

Select item 149128294319.

rs1491282943 has merged into rs1314961729 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,A,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:75537361 (GRCh38)
15:75829702 (GRCh37)
Canonical SPDI:: NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:75537351:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.75537361_75537372del, NC_000015.10:g.75537362_75537372del, NC_000015.10:g.75537365_75537372del, NC_000015.10:g.75537366_75537372del, NC_000015.10:g.75537367_75537372del, NC_000015.10:g.75537368_75537372del, NC_000015.10:g.75537369_75537372del, NC_000015.10:g.75537371_75537372del, NC_000015.10:g.75537372del, NC_000015.10:g.75537372dup, NC_000015.10:g.75537371_75537372dup, NC_000015.10:g.75537370_75537372dup, NC_000015.9:g.75829702_75829713del, NC_000015.9:g.75829703_75829713del, NC_000015.9:g.75829706_75829713del, NC_000015.9:g.75829707_75829713del, NC_000015.9:g.75829708_75829713del, NC_000015.9:g.75829709_75829713del, NC_000015.9:g.75829710_75829713del, NC_000015.9:g.75829712_75829713del, NC_000015.9:g.75829713del, NC_000015.9:g.75829713dup, NC_000015.9:g.75829712_75829713dup, NC_000015.9:g.75829711_75829713dup

Select item 149127465020.

rs1491274650 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:75530660 (GRCh38)
15:75823001 (GRCh37)
Canonical SPDI:: NC_000015.10:75530655:TATATA:TATA
Gene:: PTPN9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TATA=0./0 (ALFA)
HGVS:: NC_000015.10:g.75530656TA[2], NC_000015.9:g.75822997TA[2]

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