SNP Links for Gene (Select 57727) - SNP

Links from Gene

Items: 1 to 20 of 7409

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Select item 14912297061.

rs1491229706 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 20:46063837 (GRCh38)
20:44692476 (GRCh37)
Canonical SPDI:: NC_000020.11:46063832:GAGAGA:GAGA
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.000029/4 (GnomAD)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000020.11:g.46063833GA[2], NC_000020.10:g.44692472GA[2]

Select item 14910039702.

rs1491003970 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:46086756 (GRCh38)
20:44715395 (GRCh37)
Canonical SPDI:: NC_000020.11:46086755:G:T
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.46086756G>T, NC_000020.10:g.44715395G>T

Select item 14909252623.

rs1490925262 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:46090069 (GRCh38)
20:44718708 (GRCh37)
Canonical SPDI:: NC_000020.11:46090068:A:C
Gene:: NCOA5 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000020.11:g.46090069A>C, NC_000020.10:g.44718708A>C

Select item 14908059784.

rs1490805978 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 20:46064856 (GRCh38)
20:44693495 (GRCh37)
Canonical SPDI:: NC_000020.11:46064855:A:T
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.46064856A>T, NC_000020.10:g.44693495A>T

Select item 14906871875.

rs1490687187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:46063852 (GRCh38)
20:44692491 (GRCh37)
Canonical SPDI:: NC_000020.11:46063851:G:A
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46063852G>A, NC_000020.10:g.44692491G>A

Select item 14905125726.

rs1490512572 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:46087123 (GRCh38)
20:44715762 (GRCh37)
Canonical SPDI:: NC_000020.11:46087122:G:A
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46087123G>A, NC_000020.10:g.44715762G>A

Select item 14903157787.

rs1490315778 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46065417 (GRCh38)
20:44694056 (GRCh37)
Canonical SPDI:: NC_000020.11:46065416:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.46065417T>C, NC_000020.10:g.44694056T>C

Select item 14901992348.

rs1490199234 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:46064320 (GRCh38)
20:44692959 (GRCh37)
Canonical SPDI:: NC_000020.11:46064319:A:G
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.46064320A>G, NC_000020.10:g.44692959A>G

Select item 14901616429.

rs1490161642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:46070874 (GRCh38)
20:44699513 (GRCh37)
Canonical SPDI:: NC_000020.11:46070873:G:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000020.11:g.46070874G>C, NC_000020.10:g.44699513G>C

Select item 149000459210.

rs1490004592 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46072727 (GRCh38)
20:44701366 (GRCh37)
Canonical SPDI:: NC_000020.11:46072726:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000020.11:g.46072727T>C, NC_000020.10:g.44701366T>C

Select item 148998732311.

rs1489987323 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:46071958 (GRCh38)
20:44700597 (GRCh37)
Canonical SPDI:: NC_000020.11:46071957:G:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000020.11:g.46071958G>C, NC_000020.10:g.44700597G>C

Select item 148988903312.

rs1489889033 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46073333 (GRCh38)
20:44701972 (GRCh37)
Canonical SPDI:: NC_000020.11:46073332:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.46073333T>C, NC_000020.10:g.44701972T>C

Select item 148980957613.

rs1489809576 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:46080320 (GRCh38)
20:44708959 (GRCh37)
Canonical SPDI:: NC_000020.11:46080319:A:G
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46080320A>G, NC_000020.10:g.44708959A>G

Select item 148976902814.

rs1489769028 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46089435 (GRCh38)
20:44718074 (GRCh37)
Canonical SPDI:: NC_000020.11:46089434:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46089435T>C, NC_000020.10:g.44718074T>C

Select item 148962426815.

rs1489624268 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:46064781 (GRCh38)
20:44693420 (GRCh37)
Canonical SPDI:: NC_000020.11:46064780:G:T
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000020.11:g.46064781G>T, NC_000020.10:g.44693420G>T

Select item 148903438616.

rs1489034386 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46072804 (GRCh38)
20:44701443 (GRCh37)
Canonical SPDI:: NC_000020.11:46072803:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000036/5 (GnomAD)
C=0.000049/13 (TOPMED)
HGVS:: NC_000020.11:g.46072804T>C, NC_000020.10:g.44701443T>C

Select item 148900411517.

rs1489004115 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 20:46073772 (GRCh38)
20:44702411 (GRCh37)
Canonical SPDI:: NC_000020.11:46073771:T:A,NC_000020.11:46073771:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46073772T>A, NC_000020.11:g.46073772T>C, NC_000020.10:g.44702411T>A, NC_000020.10:g.44702411T>C

Select item 148891871818.

rs1488918718 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:46070421 (GRCh38)
20:44699060 (GRCh37)
Canonical SPDI:: NC_000020.11:46070420:T:C
Gene:: NCOA5 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,5_prime_UTR_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.46070421T>C, NC_000020.10:g.44699060T>C, NM_020967.3:c.154A>G, NM_020967.2:c.154A>G, NM_001348149.2:c.154A>G, NM_001348149.1:c.154A>G, NM_001348151.2:c.-162A>G, NM_001348151.1:c.-162A>G, NM_001348148.2:c.-162A>G, NM_001348148.1:c.-162A>G, NM_001348150.2:c.108A>G, NM_001348150.1:c.108A>G, NP_066018.1:p.Arg52Gly, NP_001335078.1:p.Arg52Gly

Select item 148890898119.

rs1488908981 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:46077140 (GRCh38)
20:44705779 (GRCh37)
Canonical SPDI:: NC_000020.11:46077139:G:A
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.46077140G>A, NC_000020.10:g.44705779G>A

Select item 148883766320.

rs1488837663 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 20:46075159 (GRCh38)
20:44703798 (GRCh37)
Canonical SPDI:: NC_000020.11:46075158:G:A,NC_000020.11:46075158:G:C
Gene:: NCOA5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.46075159G>A, NC_000020.11:g.46075159G>C, NC_000020.10:g.44703798G>A, NC_000020.10:g.44703798G>C

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