SNP Links for Gene (Select 574443) - SNP

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Links from Gene

Items: 1 to 20 of 583

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Select item 14891862071.

rs1489186207 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:136903323 (GRCh38)
7:136588070 (GRCh37)
Canonical SPDI:: NC_000007.14:136903322:G:T
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000007.14:g.136903323G>T, NC_000007.13:g.136588070G>T, NG_011846.2:g.39672G>T

Select item 14890770492.

rs1489077049 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAA>- [Show Flanks]
Chromosome:: 7:136903675 (GRCh38)
7:136588422 (GRCh37)
Canonical SPDI:: NC_000007.14:136903671:TAAATAA:TAA
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136903675_136903678del, NC_000007.13:g.136588422_136588425del, NG_011846.2:g.40024_40027del

Select item 14888224203.

rs1488822420 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:136902742 (GRCh38)
7:136587489 (GRCh37)
Canonical SPDI:: NC_000007.14:136902741:C:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136902742C>G, NC_000007.13:g.136587489C>G, NG_011846.2:g.39091C>G

Select item 14875790594.

rs1487579059 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 7:136902929 (GRCh38)
7:136587676 (GRCh37)
Canonical SPDI:: NC_000007.14:136902928:TT:T
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.136902930del, NC_000007.13:g.136587677del, NG_011846.2:g.39279del

Select item 14871056785.

rs1487105678 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:136901495 (GRCh38)
7:136586242 (GRCh37)
Canonical SPDI:: NC_000007.14:136901494:C:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136901495C>G, NC_000007.13:g.136586242C>G, NG_011846.2:g.37844C>G

Select item 14855738036.

rs1485573803 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:136902825 (GRCh38)
7:136587572 (GRCh37)
Canonical SPDI:: NC_000007.14:136902824:A:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.136902825A>G, NC_000007.13:g.136587572A>G, NG_011846.2:g.39174A>G

Select item 14841125767.

rs1484112576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:136902091 (GRCh38)
7:136586838 (GRCh37)
Canonical SPDI:: NC_000007.14:136902090:T:C
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.136902091T>C, NC_000007.13:g.136586838T>C, NG_011846.2:g.38440T>C

Select item 14831838278.

rs1483183827 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:136903568 (GRCh38)
7:136588315 (GRCh37)
Canonical SPDI:: NC_000007.14:136903567:A:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000212/4 (TOMMO)
HGVS:: NC_000007.14:g.136903568A>G, NC_000007.13:g.136588315A>G, NG_011846.2:g.39917A>G

Select item 14831321939.

rs1483132193 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:136902445 (GRCh38)
7:136587192 (GRCh37)
Canonical SPDI:: NC_000007.14:136902444:T:A
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.136902445T>A, NC_000007.13:g.136587192T>A, NG_011846.2:g.38794T>A

Select item 148249051810.

rs1482490518 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:136901604 (GRCh38)
7:136586351 (GRCh37)
Canonical SPDI:: NC_000007.14:136901603:T:C
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.136901604T>C, NC_000007.13:g.136586351T>C, NG_011846.2:g.37953T>C

Select item 148190296811.

rs1481902968 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:136903090 (GRCh38)
7:136587837 (GRCh37)
Canonical SPDI:: NC_000007.14:136903089:A:T
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000347/5 (ALFA)
T=0.000072/19 (TOPMED)
T=0.000193/27 (GnomAD)
HGVS:: NC_000007.14:g.136903090A>T, NC_000007.13:g.136587837A>T, NG_011846.2:g.39439A>T

Select item 147871323212.

rs1478713232 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTT>- [Show Flanks]
Chromosome:: 7:136903543 (GRCh38)
7:136588290 (GRCh37)
Canonical SPDI:: NC_000007.14:136903541:TATTT:T
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136903543_136903546del, NC_000007.13:g.136588290_136588293del, NG_011846.2:g.39892_39895del

Select item 147849622413.

rs1478496224 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:136903400 (GRCh38)
7:136588147 (GRCh37)
Canonical SPDI:: NC_000007.14:136903399:C:A,NC_000007.14:136903399:C:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.136903400C>A, NC_000007.14:g.136903400C>G, NC_000007.13:g.136588147C>A, NC_000007.13:g.136588147C>G, NG_011846.2:g.39749C>A, NG_011846.2:g.39749C>G

Select item 147678399714.

rs1476783997 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 7:136903721 (GRCh38)
7:136588468 (GRCh37)
Canonical SPDI:: NC_000007.14:136903720:TTT:TT
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency
MAF:: -=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.136903723del, NC_000007.13:g.136588470del, NG_011846.2:g.40072del

Select item 147473027215.

rs1474730272 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:136903446 (GRCh38)
7:136588193 (GRCh37)
Canonical SPDI:: NC_000007.14:136903445:A:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136903446A>G, NC_000007.13:g.136588193A>G, NG_011846.2:g.39795A>G

Select item 147359827716.

rs1473598277 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 7:136902193 (GRCh38)
7:136586940 (GRCh37)
Canonical SPDI:: NC_000007.14:136902191:TAT:T
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136902193_136902194del, NC_000007.13:g.136586940_136586941del, NG_011846.2:g.38542_38543del

Select item 147266395817.

rs1472663958 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:136903689 (GRCh38)
7:136588436 (GRCh37)
Canonical SPDI:: NC_000007.14:136903688:G:A
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.136903689G>A, NC_000007.13:g.136588436G>A, NG_011846.2:g.40038G>A

Select item 147255116118.

rs1472551161 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:136901255 (GRCh38)
7:136586002 (GRCh37)
Canonical SPDI:: NC_000007.14:136901254:G:A
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.136901255G>A, NC_000007.13:g.136586002G>A, NG_011846.2:g.37604G>A

Select item 147197359419.

rs1471973594 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:136901665 (GRCh38)
7:136586412 (GRCh37)
Canonical SPDI:: NC_000007.14:136901664:A:G
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.136901665A>G, NC_000007.13:g.136586412A>G, NG_011846.2:g.38014A>G

Select item 147081098320.

rs1470810983 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:136901599 (GRCh38)
7:136586346 (GRCh37)
Canonical SPDI:: NC_000007.14:136901598:T:C
Gene:: CHRM2 (Varview), LOC349160 (Varview), MIR490 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.136901599T>C, NC_000007.13:g.136586346T>C, NG_011846.2:g.37948T>C

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