SNP Links for Gene (Select 574036) - SNP

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Select item 14914717211.

rs1491471721 has merged into rs35442441 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:210232177 (GRCh38)
1:210405522 (GRCh37)
Canonical SPDI:: NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:210232164:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
-=0.45/18 (GENOME_DK)
HGVS:: NC_000001.11:g.210232177_210232180del, NC_000001.11:g.210232179_210232180del, NC_000001.11:g.210232180del, NC_000001.11:g.210232180dup, NC_000001.11:g.210232179_210232180dup, NC_000001.11:g.210232178_210232180dup, NC_000001.11:g.210232177_210232180dup, NC_000001.11:g.210232171_210232180dup, NC_000001.11:g.210232170_210232180dup, NC_000001.11:g.210232180_210232181insTTTTTTTTTTTTTTTTTT, NC_000001.10:g.210405522_210405525del, NC_000001.10:g.210405524_210405525del, NC_000001.10:g.210405525del, NC_000001.10:g.210405525dup, NC_000001.10:g.210405524_210405525dup, NC_000001.10:g.210405523_210405525dup, NC_000001.10:g.210405522_210405525dup, NC_000001.10:g.210405516_210405525dup, NC_000001.10:g.210405515_210405525dup, NC_000001.10:g.210405525_210405526insTTTTTTTTTTTTTTTTTT, NW_011332687.1:g.11919_11922del, NW_011332687.1:g.11921_11922del, NW_011332687.1:g.11922del, NW_011332687.1:g.11922dup, NW_011332687.1:g.11921_11922dup, NW_011332687.1:g.11920_11922dup, NW_011332687.1:g.11919_11922dup, NW_011332687.1:g.11913_11922dup, NW_011332687.1:g.11912_11922dup, NW_011332687.1:g.11922_11923insTTTTTTTTTTTTTTTTTT

Select item 14913228442.

rs1491322844 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA [Show Flanks]
Chromosome:: 1:210233994 (GRCh38)
1:210407340 (GRCh37)
Canonical SPDI:: NC_000001.11:210233994::TA
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TA=0./0 (ALFA)
TA=0.000057/15 (TOPMED)
TA=0.000111/15 (GnomAD)
HGVS:: NC_000001.11:g.210233994_210233995insTA, NC_000001.10:g.210407339_210407340insTA, NW_011332687.1:g.13736_13737insTA, NR_024337.1:n.127_128insTA

Select item 14912268943.

rs1491226894 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 1:210233994 (GRCh38)
1:210407339 (GRCh37)
Canonical SPDI:: NC_000001.11:210233993:TA:
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00084/10 (ALFA)
-=0.00227/220 (GnomAD)
HGVS:: NC_000001.11:g.210233994_210233995del, NC_000001.10:g.210407339_210407340del, NW_011332687.1:g.13736_13737del, NR_024337.1:n.127_128del

Select item 14905611794.

rs1490561179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:210234691 (GRCh38)
1:210408036 (GRCh37)
Canonical SPDI:: NC_000001.11:210234690:A:C,NC_000001.11:210234690:A:G
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.210234691A>C, NC_000001.11:g.210234691A>G, NC_000001.10:g.210408036A>C, NC_000001.10:g.210408036A>G, NW_011332687.1:g.14433A>C, NW_011332687.1:g.14433A>G

Select item 14902544955.

rs1490254495 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:210233778 (GRCh38)
1:210407123 (GRCh37)
Canonical SPDI:: NC_000001.11:210233777:C:A,NC_000001.11:210233777:C:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000007/1 (GnomAD_exomes)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.210233778C>A, NC_000001.11:g.210233778C>T, NC_000001.10:g.210407123C>A, NC_000001.10:g.210407123C>T, NW_011332687.1:g.13520C>A, NW_011332687.1:g.13520C>T, NR_024337.2:n.108G>T, NR_024337.2:n.108G>A, NR_024337.1:n.344G>T, NR_024337.1:n.344G>A

Select item 14896590286.

rs1489659028 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:210233095 (GRCh38)
1:210406440 (GRCh37)
Canonical SPDI:: NC_000001.11:210233094:C:G,NC_000001.11:210233094:C:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.210233095C>G, NC_000001.11:g.210233095C>T, NC_000001.10:g.210406440C>G, NC_000001.10:g.210406440C>T, NW_011332687.1:g.12837C>G, NW_011332687.1:g.12837C>T

Select item 14883248187.

rs1488324818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:210231915 (GRCh38)
1:210405260 (GRCh37)
Canonical SPDI:: NC_000001.11:210231914:G:A
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.210231915G>A, NC_000001.10:g.210405260G>A, NW_011332687.1:g.11657G>A

Select item 14879937638.

rs1487993763 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:210232866 (GRCh38)
1:210406211 (GRCh37)
Canonical SPDI:: NC_000001.11:210232865:T:C
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.210232866T>C, NC_000001.10:g.210406211T>C, NW_011332687.1:g.12608T>C, NM_019605.5:c.-163T>C, NM_019605.4:c.-163T>C, NM_019605.3:c.-163T>C, NM_001354173.2:c.-163T>C, NM_001354173.1:c.-163T>C

Select item 14878805329.

rs1487880532 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:210232195 (GRCh38)
1:210405540 (GRCh37)
Canonical SPDI:: NC_000001.11:210232194:T:C
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
C=0.0275/80 (KOREAN)
HGVS:: NC_000001.11:g.210232195T>C, NC_000001.10:g.210405540T>C, NW_011332687.1:g.11937T>C

Select item 148782606910.

rs1487826069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:210232816 (GRCh38)
1:210406161 (GRCh37)
Canonical SPDI:: NC_000001.11:210232815:C:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000043/6 (GnomAD)
T=0.000057/15 (TOPMED)
HGVS:: NC_000001.11:g.210232816C>T, NC_000001.10:g.210406161C>T, NW_011332687.1:g.12558C>T, NM_019605.5:c.-213C>T, NM_019605.4:c.-213C>T, NM_001354173.2:c.-213C>T, NM_001354173.1:c.-213C>T

Select item 148773445211.

rs1487734452 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 1:210233527 (GRCh38)
1:210406872 (GRCh37)
Canonical SPDI:: NC_000001.11:210233526:A:C,NC_000001.11:210233526:A:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000001.11:g.210233527A>C, NC_000001.11:g.210233527A>T, NC_000001.10:g.210406872A>C, NC_000001.10:g.210406872A>T, NW_011332687.1:g.13269A>C, NW_011332687.1:g.13269A>T

Select item 148749827212.

rs1487498272 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:210232485 (GRCh38)
1:210405830 (GRCh37)
Canonical SPDI:: NC_000001.11:210232484:T:A
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.210232485T>A, NC_000001.10:g.210405830T>A, NW_011332687.1:g.12227T>A

Select item 148742430413.

rs1487424304 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:210232808 (GRCh38)
1:210406153 (GRCh37)
Canonical SPDI:: NC_000001.11:210232807:G:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.210232808G>T, NC_000001.10:g.210406153G>T, NW_011332687.1:g.12550G>T, NM_019605.5:c.-221G>T, NM_019605.4:c.-221G>T, NM_001354173.2:c.-221G>T, NM_001354173.1:c.-221G>T

Select item 148740588714.

rs1487405887 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 1:210233198 (GRCh38)
1:210406543 (GRCh37)
Canonical SPDI:: NC_000001.11:210233197:G:A,NC_000001.11:210233197:G:C,NC_000001.11:210233197:G:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.210233198G>A, NC_000001.11:g.210233198G>C, NC_000001.11:g.210233198G>T, NC_000001.10:g.210406543G>A, NC_000001.10:g.210406543G>C, NC_000001.10:g.210406543G>T, NW_011332687.1:g.12940G>A, NW_011332687.1:g.12940G>C, NW_011332687.1:g.12940G>T

Select item 148730505415.

rs1487305054 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:210235407 (GRCh38)
1:210408752 (GRCh37)
Canonical SPDI:: NC_000001.11:210235406:T:C
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.210235407T>C, NC_000001.10:g.210408752T>C, NW_011332687.1:g.15149T>C

Select item 148641979116.

rs1486419791 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:210235920 (GRCh38)
1:210409265 (GRCh37)
Canonical SPDI:: NC_000001.11:210235919:C:A
Gene:: SERTAD4 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.210235920C>A, NC_000001.10:g.210409265C>A, NW_011332687.1:g.15662C>A

Select item 148599718817.

rs1485997188 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:210232165 (GRCh38)
1:210405510 (GRCh37)
Canonical SPDI:: NC_000001.11:210232164:T:C
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000063/1 (GnomAD)
HGVS:: NC_000001.11:g.210232165T>C, NC_000001.10:g.210405510T>C, NW_011332687.1:g.11907T>C

Select item 148586629518.

rs1485866295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:210232135 (GRCh38)
1:210405480 (GRCh37)
Canonical SPDI:: NC_000001.11:210232134:C:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.210232135C>T, NC_000001.10:g.210405480C>T, NW_011332687.1:g.11877C>T

Select item 148546675419.

rs1485466754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:210232095 (GRCh38)
1:210405440 (GRCh37)
Canonical SPDI:: NC_000001.11:210232094:G:A
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.210232095G>A, NC_000001.10:g.210405440G>A, NW_011332687.1:g.11837G>A

Select item 148534838420.

rs1485348384 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 1:210234286 (GRCh38)
1:210407631 (GRCh37)
Canonical SPDI:: NC_000001.11:210234285:G:A,NC_000001.11:210234285:G:C,NC_000001.11:210234285:G:T
Gene:: SERTAD4 (Varview), SERTAD4-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.001028/3 (KOREAN)
HGVS:: NC_000001.11:g.210234286G>A, NC_000001.11:g.210234286G>C, NC_000001.11:g.210234286G>T, NC_000001.10:g.210407631G>A, NC_000001.10:g.210407631G>C, NC_000001.10:g.210407631G>T, NW_011332687.1:g.14028G>A, NW_011332687.1:g.14028G>C, NW_011332687.1:g.14028G>T

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