SNP Links for Gene (Select 56971) - SNP

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Items: 1 to 20 of 3531

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Select item 14915478011.

rs1491547801 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTCT [Show Flanks]
Chromosome:: 19:44683056 (GRCh38)
19:45186329 (GRCh37)
Canonical SPDI:: NC_000019.10:44683056:TCT:TCTTTCT
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TCTTTCT=0.00008/1 (ALFA)
TCTT=0.00015/8 (GnomAD)
HGVS:: NC_000019.10:g.44683059_44683060insTTCT, NC_000019.9:g.45186331_45186332insTTCT

Select item 14914956092.

rs1491495609 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CC [Show Flanks]
Chromosome:: 19:44683055 (GRCh38)
19:45186328 (GRCh37)
Canonical SPDI:: NC_000019.10:44683055:C:CCC
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CCC=0./0 (ALFA)
CC=0.000187/19 (GnomAD)
HGVS:: NC_000019.10:g.44683056_44683057insCC, NC_000019.9:g.45186328_45186329insCC

Select item 14914832763.

rs1491483276 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 19:44683055 (GRCh38)
19:45186327 (GRCh37)
Canonical SPDI:: NC_000019.10:44683054:AC:
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.44683055_44683056del, NC_000019.9:g.45186327_45186328del

Select item 14912448764.

rs1491244876 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 19:44675097 (GRCh38)
19:45178369 (GRCh37)
Canonical SPDI:: NC_000019.10:44675095:GCG:G
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000019.10:g.44675097_44675098del, NC_000019.9:g.45178369_45178370del

Select item 14909256685.

rs1490925668 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:44678514 (GRCh38)
19:45181786 (GRCh37)
Canonical SPDI:: NC_000019.10:44678513:G:A,NC_000019.10:44678513:G:T
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44678514G>A, NC_000019.10:g.44678514G>T, NC_000019.9:g.45181786G>A, NC_000019.9:g.45181786G>T

Select item 14903951586.

rs1490395158 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:44670227 (GRCh38)
19:45173499 (GRCh37)
Canonical SPDI:: NC_000019.10:44670226:A:G
Gene:: CEACAM19 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44670227A>G, NC_000019.9:g.45173499A>G

Select item 14901428677.

rs1490142867 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:44680971 (GRCh38)
19:45184243 (GRCh37)
Canonical SPDI:: NC_000019.10:44680970:G:A,NC_000019.10:44680970:G:C
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000019.10:g.44680971G>A, NC_000019.10:g.44680971G>C, NC_000019.9:g.45184243G>A, NC_000019.9:g.45184243G>C

Select item 14900227628.

rs1490022762 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44675315 (GRCh38)
19:45178587 (GRCh37)
Canonical SPDI:: NC_000019.10:44675314:C:T
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.44675315C>T, NC_000019.9:g.45178587C>T

Select item 14898329639.

rs1489832963 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:44672029 (GRCh38)
19:45175301 (GRCh37)
Canonical SPDI:: NC_000019.10:44672028:G:A
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000019.10:g.44672029G>A, NC_000019.9:g.45175301G>A

Select item 148932067910.

rs1489320679 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:44670449 (GRCh38)
19:45173721 (GRCh37)
Canonical SPDI:: NC_000019.10:44670448:A:G
Gene:: CEACAM19 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.44670449A>G, NC_000019.9:g.45173721A>G

Select item 148923921711.

rs1489239217 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44684100 (GRCh38)
19:45187372 (GRCh37)
Canonical SPDI:: NC_000019.10:44684099:C:T
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.44684100C>T, NC_000019.9:g.45187372C>T, NM_020219.5:c.*610C>T, NM_020219.4:c.*610C>T, NM_020219.3:c.*610C>T, NM_001127893.3:c.*610C>T, NM_001127893.2:c.*610C>T, NM_001127893.1:c.*610C>T, NM_001389722.1:c.*610C>T

Select item 148918754912.

rs1489187549 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 19:44683055 (GRCh38)
19:45186327 (GRCh37)
Canonical SPDI:: NC_000019.10:44683054:A:C,NC_000019.10:44683054:A:G,NC_000019.10:44683054:A:T
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000059/6 (GnomAD)
T=0.000478/8 (TOMMO)
T=0.03833/112 (KOREAN)
A=0.5/2 (SGDP_PRJ)
HGVS:: NC_000019.10:g.44683055A>C, NC_000019.10:g.44683055A>G, NC_000019.10:g.44683055A>T, NC_000019.9:g.45186327A>C, NC_000019.9:g.45186327A>G, NC_000019.9:g.45186327A>T

Select item 148892521713.

rs1488925217 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:44679011 (GRCh38)
19:45182283 (GRCh37)
Canonical SPDI:: NC_000019.10:44679010:G:A
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.44679011G>A, NC_000019.9:g.45182283G>A

Select item 148891910514.

rs1488919105 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44680977 (GRCh38)
19:45184249 (GRCh37)
Canonical SPDI:: NC_000019.10:44680976:C:T
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000312/2 (1000Genomes)
T=0.000691/2 (KOREAN)
T=0.001982/33 (TOMMO)
T=0.002183/4 (Korea1K)
HGVS:: NC_000019.10:g.44680977C>T, NC_000019.9:g.45184249C>T

Select item 148891216115.

rs1488912161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:44684625 (GRCh38)
19:45187897 (GRCh37)
Canonical SPDI:: NC_000019.10:44684624:C:G
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44684625C>G, NC_000019.9:g.45187897C>G

Select item 148854322816.

rs1488543228 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:44678075 (GRCh38)
19:45181347 (GRCh37)
Canonical SPDI:: NC_000019.10:44678074:C:G
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44678075C>G, NC_000019.9:g.45181347C>G

Select item 148828823317.

rs1488288233 has merged into rs777312584 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 19:44674568 (GRCh38)
19:45177840 (GRCh37)
Canonical SPDI:: NC_000019.10:44674567:TTTTTTTT:TTTTTTT,NC_000019.10:44674567:TTTTTTTT:TTTTTTTTT
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.44674575del, NC_000019.10:g.44674575dup, NC_000019.9:g.45177847del, NC_000019.9:g.45177847dup

Select item 148818247818.

rs1488182478 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:44675325 (GRCh38)
19:45178597 (GRCh37)
Canonical SPDI:: NC_000019.10:44675324:A:G
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44675325A>G, NC_000019.9:g.45178597A>G

Select item 148788103219.

rs1487881032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44674891 (GRCh38)
19:45178163 (GRCh37)
Canonical SPDI:: NC_000019.10:44674890:C:T
Gene:: CEACAM19 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.44674891C>T, NC_000019.9:g.45178163C>T

Select item 148727976520.

rs1487279765 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:44683079 (GRCh38)
19:45186351 (GRCh37)
Canonical SPDI:: NC_000019.10:44683078:T:C
Gene:: CEACAM19 (Varview), LOC107985306 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44683079T>C, NC_000019.9:g.45186351T>C

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