SNP Links for Gene (Select 5617) - SNP

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Select item 14914604341.

rs1491460434 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AAAAGGAAGGAAGGAAGGAAAGAA,AGAA [Show Flanks]
Chromosome:: 6:22293658 (GRCh38)
6:22293888 (GRCh37)
Canonical SPDI:: NC_000006.12:22293658:GAA:GAAAAAAGGAAGGAAGGAAGGAAAGAA,NC_000006.12:22293658:GAA:GAAAGAA
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.39125/6484 (TOMMO)
-=0.40709/241 (NorthernSweden)
HGVS:: NC_000006.12:g.22293661_22293662insAAAAGGAAGGAAGGAAGGAAAGAA, NC_000006.12:g.22293661_22293662insAGAA, NC_000006.11:g.22293890_22293891insAAAAGGAAGGAAGGAAGGAAAGAA, NC_000006.11:g.22293890_22293891insAGAA, NG_029819.1:g.14195_14196insTTTCCTTCCTTCCTTCCTTTTTTC, NG_029819.1:g.14195_14196insTTTC

Select item 14914183342.

rs1491418334 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 6:22293658 (GRCh38)
6:22293887 (GRCh37)
Canonical SPDI:: NC_000006.12:22293657:GG:
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.000117/15 (GnomAD)
-=0.003286/55 (TOMMO)
HGVS:: NC_000006.12:g.22293658_22293659del, NC_000006.11:g.22293887_22293888del, NG_029819.1:g.14195_14196del

Select item 14911651453.

rs1491165145 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 6:22288902 (GRCh38)
6:22289132 (GRCh37)
Canonical SPDI:: NC_000006.12:22288902:C:CAC
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: CA=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22288903_22288904insAC, NC_000006.11:g.22289132_22289133insAC, NG_029819.1:g.18951_18952insTG

Select item 14910858584.

rs1491085858 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CGCGCGCGTGTGTGTG,CGTGTGCGCGCGCGCGTGTGTGTG,CGTGTGTGTG [Show Flanks]
Chromosome:: 6:22288919 (GRCh38)
6:22289149 (GRCh37)
Canonical SPDI:: NC_000006.12:22288919:G:GCGCGCGCGTGTGTGTG,NC_000006.12:22288919:G:GCGTGTGCGCGCGCGCGTGTGTGTG,NC_000006.12:22288919:G:GCGTGTGTGTG
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGTGTGTGTG=0./0 (ALFA)
GCGTGTGTGT=0.000004/1 (TOPMED)
GCGTGTGCGCGCGCGCGTGTGTGT=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22288920GC[4]GT[4]G[1], NC_000006.12:g.22288920_22288921insCGTGTGCGCGCGCGCGTGTGTGTG, NC_000006.12:g.22288920_22288921insCGTGTGTGTG, NC_000006.11:g.22289149GC[4]GT[4]G[1], NC_000006.11:g.22289149_22289150insCGTGTGCGCGCGCGCGTGTGTGTG, NC_000006.11:g.22289149_22289150insCGTGTGTGTG, NG_029819.1:g.18934CA[4]CG[4]C[1], NG_029819.1:g.18934CA[4]CG[5]CA[2]CGC[1], NG_029819.1:g.18934CA[4]CGC[1]

Select item 14907404755.

rs1490740475 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:22289495 (GRCh38)
6:22289724 (GRCh37)
Canonical SPDI:: NC_000006.12:22289494:A:G
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22289495A>G, NC_000006.11:g.22289724A>G, NG_029819.1:g.18359T>C

Select item 14905319256.

rs1490531925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:22296655 (GRCh38)
6:22296884 (GRCh37)
Canonical SPDI:: NC_000006.12:22296654:A:G
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22296655A>G, NC_000006.11:g.22296884A>G, NG_029819.1:g.11199T>C

Select item 14902138997.

rs1490213899 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAGGAAGGAAGGAAGGAAA>- [Show Flanks]
Chromosome:: 6:22293687 (GRCh38)
6:22293916 (GRCh37)
Canonical SPDI:: NC_000006.12:22293673:GGAAGGAAGGAAAAAAGGAAGGAAGGAAGGAAA:GGAAGGAAGGAAA
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00018/5 (GnomAD)
HGVS:: NC_000006.12:g.22293687_22293706del, NC_000006.11:g.22293916_22293935del, NG_029819.1:g.14161_14180del

Select item 14895534808.

rs1489553480 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:22303284 (GRCh38)
6:22303513 (GRCh37)
Canonical SPDI:: NC_000006.12:22303283:G:A
Gene:: PRL (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22303284G>A, NC_000006.11:g.22303513G>A, NG_029819.1:g.4570C>T

Select item 14893849169.

rs1489384916 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 6:22290143 (GRCh38)
6:22290372 (GRCh37)
Canonical SPDI:: NC_000006.12:22290142:AAAAA:AAAA
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAA=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.22290147del, NC_000006.11:g.22290376del, NG_029819.1:g.17711del

Select item 148929841410.

rs1489298414 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:22293600 (GRCh38)
6:22293829 (GRCh37)
Canonical SPDI:: NC_000006.12:22293599:G:A
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00042/5 (ALFA)
A=0.00689/20 (KOREAN)
HGVS:: NC_000006.12:g.22293600G>A, NC_000006.11:g.22293829G>A, NG_029819.1:g.14254C>T

Select item 148906635111.

rs1489066351 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:22289314 (GRCh38)
6:22289543 (GRCh37)
Canonical SPDI:: NC_000006.12:22289313:T:C
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.22289314T>C, NC_000006.11:g.22289543T>C, NG_029819.1:g.18540A>G

Select item 148898479012.

rs1488984790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:22301243 (GRCh38)
6:22301472 (GRCh37)
Canonical SPDI:: NC_000006.12:22301242:C:A
Gene:: PRL (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22301243C>A, NC_000006.11:g.22301472C>A, NG_029819.1:g.6611G>T

Select item 148884062013.

rs1488840620 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:22290532 (GRCh38)
6:22290761 (GRCh37)
Canonical SPDI:: NC_000006.12:22290531:C:A
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.22290532C>A, NC_000006.11:g.22290761C>A, NG_029819.1:g.17322G>T

Select item 148866218614.

rs1488662186 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:22302449 (GRCh38)
6:22302678 (GRCh37)
Canonical SPDI:: NC_000006.12:22302448:T:A
Gene:: PRL (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.22302449T>A, NC_000006.11:g.22302678T>A, NG_029819.1:g.5405A>T

Select item 148838449715.

rs1488384497 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:22299436 (GRCh38)
6:22299665 (GRCh37)
Canonical SPDI:: NC_000006.12:22299435:G:T
Gene:: PRL (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.22299436G>T, NC_000006.11:g.22299665G>T, NG_029819.1:g.8418C>A

Select item 148800745816.

rs1488007458 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:22299976 (GRCh38)
6:22300205 (GRCh37)
Canonical SPDI:: NC_000006.12:22299975:A:T
Gene:: PRL (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.22299976A>T, NC_000006.11:g.22300205A>T, NG_029819.1:g.7878T>A

Select item 148799515917.

rs1487995159 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:22302760 (GRCh38)
6:22302989 (GRCh37)
Canonical SPDI:: NC_000006.12:22302759:C:T
Gene:: PRL (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.22302760C>T, NC_000006.11:g.22302989C>T, NG_029819.1:g.5094G>A, NM_001163558.3:c.-98G>A, NM_001163558.2:c.-98G>A, XM_011514754.3:c.-111G>A, XM_011514754.2:c.-111G>A, XM_011514754.1:c.-111G>A, XM_011514753.3:c.-98G>A, XM_011514753.2:c.-98G>A, XM_011514753.1:c.-98G>A, XM_047419076.1:c.-246G>A, XM_047419075.1:c.-146G>A

Select item 148752173718.

rs1487521737 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 6:22286800 (GRCh38)
6:22287029 (GRCh37)
Canonical SPDI:: NC_000006.12:22286799:T:C,NC_000006.12:22286799:T:G
Gene:: PRL (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.22286800T>C, NC_000006.12:g.22286800T>G, NC_000006.11:g.22287029T>C, NC_000006.11:g.22287029T>G, NG_029819.1:g.21054A>G, NG_029819.1:g.21054A>C

Select item 148748257419.

rs1487482574 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:22293526 (GRCh38)
6:22293755 (GRCh37)
Canonical SPDI:: NC_000006.12:22293525:C:T
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/2 (GnomAD)
HGVS:: NC_000006.12:g.22293526C>T, NC_000006.11:g.22293755C>T, NG_029819.1:g.14328G>A

Select item 148730466620.

rs1487304666 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:22292690 (GRCh38)
6:22292919 (GRCh37)
Canonical SPDI:: NC_000006.12:22292689:A:C
Gene:: PRL (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.22292690A>C, NC_000006.11:g.22292919A>C, NG_029819.1:g.15164T>G

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