SNP Links for Gene (Select 56156) - SNP

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Select item 14894789161.

rs1489478916 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:107982935 (GRCh38)
X:107226165 (GRCh37)
Canonical SPDI:: NC_000023.11:107982934:T:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000064/17 (TOPMED)
A=0.000208/1 (1000Genomes)
HGVS:: NC_000023.11:g.107982935T>A, NC_000023.10:g.107226165T>A, NG_002753.3:g.2157A>T, NG_015975.1:g.4436A>T

Select item 14885009322.

rs1488500932 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107983502 (GRCh38)
X:107226732 (GRCh37)
Canonical SPDI:: NC_000023.11:107983501:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.107983502G>A, NC_000023.10:g.107226732G>A, NG_002753.3:g.1590C>T, NG_015975.1:g.3869C>T

Select item 14878127843.

rs1487812784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:107980572 (GRCh38)
X:107223802 (GRCh37)
Canonical SPDI:: NC_000023.11:107980571:C:T
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.107980572C>T, NC_000023.10:g.107223802C>T, NG_002753.3:g.4520G>A, NG_015975.1:g.6799G>A

Select item 14875221804.

rs1487522180 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:107984154 (GRCh38)
X:107227384 (GRCh37)
Canonical SPDI:: NC_000023.11:107984153:T:C
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000038/4 (GnomAD)
C=0.000057/15 (TOPMED)
HGVS:: NC_000023.11:g.107984154T>C, NC_000023.10:g.107227384T>C, NG_002753.3:g.938A>G, NG_015975.1:g.3217A>G

Select item 14870729975.

rs1487072997 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: X:107983187 (GRCh38)
X:107226417 (GRCh37)
Canonical SPDI:: NC_000023.11:107983186:C:A,NC_000023.11:107983186:C:T
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.107983187C>A, NC_000023.11:g.107983187C>T, NC_000023.10:g.107226417C>A, NC_000023.10:g.107226417C>T, NG_002753.3:g.1905G>T, NG_002753.3:g.1905G>A, NG_015975.1:g.4184G>T, NG_015975.1:g.4184G>A

Select item 14870557896.

rs1487055789 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107981945 (GRCh38)
X:107225175 (GRCh37)
Canonical SPDI:: NC_000023.11:107981944:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/2 (GnomAD_exomes)
A=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.107981945G>A, NC_000023.10:g.107225175G>A, NG_002753.3:g.3147C>T, NG_015975.1:g.5426C>T, NM_031273.2:c.183C>T

Select item 14852271387.

rs1485227138 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107982321 (GRCh38)
X:107225551 (GRCh37)
Canonical SPDI:: NC_000023.11:107982320:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.107982321G>A, NC_000023.10:g.107225551G>A, NG_002753.3:g.2771C>T, NG_015975.1:g.5050C>T, NM_031273.2:c.-44C>T

Select item 14838972608.

rs1483897260 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGA>- [Show Flanks]
Chromosome:: X:107983087 (GRCh38)
X:107226317 (GRCh37)
Canonical SPDI:: NC_000023.11:107983083:AGAAGA:AGA
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AGAAGA=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.107983084AGA[1], NC_000023.10:g.107226314AGA[1], NG_002753.3:g.2003TCT[1], NG_015975.1:g.4282TCT[1]

Select item 14819475109.

rs1481947510 [Homo sapiens]

Variant type:: DEL
Alleles:: GTTC>- [Show Flanks]
Chromosome:: X:107980959 (GRCh38)
X:107224189 (GRCh37)
Canonical SPDI:: NC_000023.11:107980958:GTTC:
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.107980959_107980962del, NC_000023.10:g.107224189_107224192del, NG_002753.3:g.4130_4133del, NG_015975.1:g.6409_6412del, NM_031273.2:c.*118_*121del

Select item 147926293810.

rs1479262938 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:107982275 (GRCh38)
X:107225505 (GRCh37)
Canonical SPDI:: NC_000023.11:107982274:T:C
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.107982275T>C, NC_000023.10:g.107225505T>C, NG_002753.3:g.2817A>G, NG_015975.1:g.5096A>G

Select item 147901119711.

rs1479011197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:107984370 (GRCh38)
X:107227600 (GRCh37)
Canonical SPDI:: NC_000023.11:107984369:T:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.107984370T>A, NC_000023.10:g.107227600T>A, NG_002753.3:g.722A>T, NG_015975.1:g.3001A>T

Select item 147824665812.

rs1478246658 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:107983622 (GRCh38)
X:107226852 (GRCh37)
Canonical SPDI:: NC_000023.11:107983621:T:C
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.107983622T>C, NC_000023.10:g.107226852T>C, NG_002753.3:g.1470A>G, NG_015975.1:g.3749A>G

Select item 147818342413.

rs1478183424 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:107984146 (GRCh38)
X:107227376 (GRCh37)
Canonical SPDI:: NC_000023.11:107984145:A:G
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.107984146A>G, NC_000023.10:g.107227376A>G, NG_002753.3:g.946T>C, NG_015975.1:g.3225T>C

Select item 147773753914.

rs1477737539 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107982922 (GRCh38)
X:107226152 (GRCh37)
Canonical SPDI:: NC_000023.11:107982921:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.107982922G>A, NC_000023.10:g.107226152G>A, NG_002753.3:g.2170C>T, NG_015975.1:g.4449C>T

Select item 147599589415.

rs1475995894 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:107980928 (GRCh38)
X:107224158 (GRCh37)
Canonical SPDI:: NC_000023.11:107980927:A:C
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.107980928A>C, NC_000023.10:g.107224158A>C, NG_002753.3:g.4164T>G, NG_015975.1:g.6443T>G, NM_031273.2:c.*152T>G

Select item 147234791216.

rs1472347912 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:107983779 (GRCh38)
X:107227009 (GRCh37)
Canonical SPDI:: NC_000023.11:107983778:A:G
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.107983779A>G, NC_000023.10:g.107227009A>G, NG_002753.3:g.1313T>C, NG_015975.1:g.3592T>C

Select item 147103757717.

rs1471037577 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:107981326 (GRCh38)
X:107224556 (GRCh37)
Canonical SPDI:: NC_000023.11:107981325:G:C
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: synonymous_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.107981326G>C, NC_000023.10:g.107224556G>C, NG_002753.3:g.3766C>G, NG_015975.1:g.6045C>G, NM_031273.2:c.693C>G

Select item 147017436218.

rs1470174362 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:107980722 (GRCh38)
X:107223952 (GRCh37)
Canonical SPDI:: NC_000023.11:107980721:C:T
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000022/2 (GnomAD)
T=0.000046/1 (TOMMO)
T=0.000049/13 (TOPMED)
HGVS:: NC_000023.11:g.107980722C>T, NC_000023.10:g.107223952C>T, NG_002753.3:g.4370G>A, NG_015975.1:g.6649G>A

Select item 146864905419.

rs1468649054 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107983568 (GRCh38)
X:107226798 (GRCh37)
Canonical SPDI:: NC_000023.11:107983567:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.107983568G>A, NC_000023.10:g.107226798G>A, NG_002753.3:g.1524C>T, NG_015975.1:g.3803C>T

Select item 146858387920.

rs1468583879 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:107983916 (GRCh38)
X:107227146 (GRCh37)
Canonical SPDI:: NC_000023.11:107983915:G:A
Gene:: TEX13B (Varview), LOC112267910 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.107983916G>A, NC_000023.10:g.107227146G>A, NG_002753.3:g.1176C>T, NG_015975.1:g.3455C>T